Multi-Omic Integration

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1 paper in the last four weeks, against 1 the four weeks before. 0.0% of all new papers.

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  1. ARO: Aligned Representation learning for multi-Omics data

    Oct 5, 2026Amogh Singh, Yash Shah, Chiara D'Ercoli +4Multi-Omic Integration

    Department of Computer Science, University of Cambridge, Cambridge, UK · DIAG, University of Rome “Sapienza”, Rome, Italy · Max Planck Institute for Intelligent Systems

  2. Tool-Augmented On-Policy Distillation for LLM Domain Adaptation in Sequence-Based Omics Tasks

    Sep 20, 2026Jie Ying, Zhefan Wang, Zihong Chen +11Multi-Omic IntegrationReasoning Benchmark

    Shanghai Artificial Intelligence Laboratory · Yazhouwan National Laboratory · Shanghai Innovation Institute +2

  3. Large-scale AI-Ready Data for Anti-Cancer Drug Response Modeling

    Aug 11, 2026Vincent Lavelle, Yitan Zhu, Kaitlyn Marlor +2PharmacokineticsMulti-Omic Integration

    Division of Data Science and Learning, Argonne National Laboratory · Computing, Environment, and Life Sciences, Argonne National Laboratory · Department of Computer Science, University of Chicago

  4. VOICE: A Vision-Omics Foundation Model Integrating Direct and Retrieval-Based Prediction of In-situ Single-Cell Gene Expression

    Aug 8, 2026Xin Luo, Yicheng Tao, Haoxuan Zeng +6Spatial TranscriptomicsSingle-Cell Rna

    University of Michigan Ann Arbor, Michigan, USA · Weill Cornell Medicine New York, New York, USA

  5. DoGMA: A Central-Dogma-Guided Foundation Model for Multi-Omics Alignment and Multi-Task Learning in Oncology

    Aug 8, 2026Junfei Ling, Bangzheng Pu, Bingsen Xue +3Multi-Omic IntegrationMultidisciplinary Tumor Boards

    Institute of Medical Robotics, Shanghai Jiao Tong University · Institute of Medical Robotics, Shanghai Jiao Tong University, Shanghai 200240, China · Institute of Data Science, The University of Hong Kong +1

  6. bioMoR: Biology-Guided Mixture-of-Recursions for Effective Genomic Learning

    Aug 7, 2026Koushik Howlader, Tirtho Roy, Md Tauhidul Islam +1Multi-Omic Integration

    1Iowa State University, Iowa, USA · 2Stanford University, CA, USA

  7. Adaptive Confidence-weighted Expansion for Trustworthy Multi-Omics Multimodal Fusion

    Jul 22, 2026Mohammad Raahemi, Ali Sekhavati, Alireza Maleki +1Multimodal FusionMultimodal Learning

    Faculty of Engineering, University of Ottawa, Ottawa ON K1N 1A2, Canada · RIV Lab, Department of Computer Engineering, Bu-Ali Sina University, Hamedan, Iran · School of Computing and Communications, Lancaster University, Lancaster, UK

  8. LATTICE: Graph Self-Supervised Learning for Multimodal Spatial Omics Integration

    Jul 15, 2026Jagan Mohan Reddy Dwarampudi, Veena Kochat, Suresh Satpati +2Spatial TranscriptomicsMulti-Omic Integration

    University of Houston · MD Anderson Cancer Center

  9. Biologically Informed Deep Neural Networks for Multi-Omic Integration, Pathway Activity Inference and Risk Stratification in Cancer

    Jul 6, 2026Pedro Henrique da Costa Avelar, Le Ou-Yang, Min Wu +1Multi-Omic IntegrationRisk Stratification

    Department of Informatics, King’s College London, London WC2B 4BG, United Kingdom · Institute for Infocomm Research, Agency for Science, Technology and Research (A*STAR), Singapore 138632, Singapore · Division of Informatics, Imaging and Data Science, Faculty of Biology, Medicine and Health, University of Manchester +1

  10. Structured Gaussian Processes for Uncertainty-Aware Classification of High-Dimensional, Small-Sampled Omics Data

    Jul 2, 2026Yue Zhang, Nandini Amit Gadhia, Georgios Karagiannis +1Multi-Omic IntegrationBacterial Colony Counting

    Department of Mathematical Sciences Durham University Durham, United Kingdom · STFC Hartree Centre University of Liverpool Liverpool, United Kingdom · STFC Hartree Centre Daresbury, United Kingdom

  11. HERO: Hypothesis-Driven Evidence Retrieval from Omics for Multi-Task Breast Cancer Analysis

    Jun 19, 2026Xiangyu Li, Ran SuMulti-Omic IntegrationCancer Detection

    College of Intelligence and Computing, Tianjin University, Tianjin 300072, China

  12. Probing, Fusion, and Trustworthiness: A Systematic Evaluation of Foundation Model Representations for Multimodal Cancer Analysis

    Jun 15, 2026Jingyu Hu, Giuseppe Tripodi, Reed Naidoo +2Pathology Foundation ModelsMultimodal Clinical Data

    The Alan Turing Institute, London, United Kingdom · University of Manchester, Manchester, United Kingdom · The Institute of Cancer Research, London, United Kingdom +1

  13. Trimodal Glioma Representation Alignment via Volumetric Contrastive Learning

    Jun 12, 2026Denise Marini, Eleonora Grassucci, Danilo ComminielloGliomaRadiomics

    Dept. of Information Engineering, Electronics, and Telecommunications, Sapienza University of Rome, Italy

  14. OmniBioTwin: A System-of-Twinned-Systems Framework for Health Digital Twins

    Jun 9, 2026Zhaohui Wang, Yu Huang, Jiang BianDigital TwinsTwins

    Indiana University School of Medicine Regenstrief Institute Indianapolis, Indiana, USA

  15. BBOmix: A Tabular Benchmark for Hyperparameter Optimization of Unsupervised Biological Representation Learning

    Jun 3, 2026Luca Thale-Bombien, Jan Ewald, Ralf König +1General Grid Search FrameworkMulti-Omic Integration

    Center for Scalable Data Analytics and Artificial Intelligence (ScaDS.AI) Dresden/Leipzig, Leipzig University · ELLIS Institute Tübingen

  16. SDM-Q: Cost-Aware Staged Decision-Making for Multi-Omics Classification with Deep Q-Learning

    May 29, 2026Nan Mu, Yangfan Xiao, Ling Wang +3Multi-Omic IntegrationMultimodal Clinical Data

    College of Computer Science, Sichuan Normal University, Chengdu, Sichuan 610101, China. · Department of Mathematics, College of Science and Mathematics, Kennesaw State University, Kennesaw, GA 30144, USA. · Department of Computer Science, College of Computing and Software Engineering, Kennesaw State University, Marietta, GA 30060, USA.

  17. OgBench: A Framework for Evaluating Graph Neural Networks on Omics Data

    May 15, 2026Louisa Cornelis, Johan Mathe, Louis Van Langendonck +2Multi-Omic IntegrationGraph Neural Networks

    UC Santa Barbara · Atmo, Inc. · Universitat Politècnica de Catalunya

  18. DUET: Dual-Paradigm Adaptive Expert Triage with Single-cell Inductive Prior for Spatial Transcriptomics Prediction

    May 13, 2026Junchao Zhu, Ruining Deng, Junlin Guo +11Spatial TranscriptomicsSingle-Cell Rna

    Vanderbilt University, Tennessee, USA · Weill Cornell Medicine, New York, USA · Vanderbilt University Medical Center, Tennessee, USA

  19. Learning predictive models for combinations of heterogeneous proteomic data sources

    May 9, 2026Michal Valko, Richard Pelikan, Miloš HauskrechtMulti-Omic IntegrationTranscriptomics

    Computer Science Department University of Pittsburgh, Pittsburgh, Pennsylvania

  20. PPI-Net connects molecular protein interactions to functional processes in disease

    May 8, 2026Kyle Higgins, Guadalupe Gonzalez, Dennis Veselkov +2Multi-Omic IntegrationDisease

    Division of Cancer, Department of Surgery and Cancer, Faculty of Medicine, Imperial College London, London, UK. · Prescient Design, Genentech, South San Francisco, CA, USA. · Department of Computing, Imperial College London, U.K.

  21. OmicsLM: A Multimodal Large Language Model for Multi-Sample Omics Reasoning

    May 7, 2026Maciej Sypetkowski, Joanna Krawczyk, Łukasz Smoliński +4Multi-Omic IntegrationTranscriptomics

    Ingenix.AI, Warsaw, Poland

  22. BioResearcher: Scenario-Guided Multi-Agent for Translational Medicine

    May 7, 2026Remigiusz Kinas, Joanna Krawczyk, Rafał Powalski +6Life Sciences ResearchMulti-Omic Integration

    Ingenix.AI, Warsaw, Poland

  23. CellxPert: Inference-Time MCMC Steering of a Multi-Omics Single-Cell Foundation Model for In-Silico Perturbation

    Apr 30, 2026Andac Demir, Erik W. Anderson, Jeremy L. Jenkins +1Single-Cell Perturbation PredictionTranscriptomics

    Novartis Biomedical Research

  24. PathMoG: A Pathway-Centric Modular Graph Neural Network for Multi-Omics Survival Prediction

    Apr 27, 2026Di Wang, Chupei Tang, Junxiao Kong +3Multi-Omic IntegrationMultidisciplinary Tumor Boards

    1Cuiying Honors College, Lanzhou University, China · School of Mathematics and Statistics, Lanzhou University, China · School of Mathematics and Statistics, Lanzhou University, China and Shanghai Innovation Institute +1

  25. CMGL: Confidence-guided Multi-omics Graph Learning for Cancer Subtype Classification

    Apr 27, 2026Boyang Fan, Hengchuang Yin, Siyu Yi +5Multi-Omic IntegrationCancer Detection

    College of Computer Science, Sichuan University, Chengdu, China · Xinjiang Technical Institute of Physics and Chemistry, Chinese Academy of Sciences, Urumqi, China · College of Mathematics, Sichuan University, Chengdu, China +1

  26. A multi-stage soft computing framework for complex disease modelling and decision support: A liver cirrhosis case study

    Apr 26, 2026Xueyuan Huang, Yuheng Wang, Yuanzhi He +8Multi-Omic IntegrationCholangiocarcinoma

    Department of Hepatobiliary Surgery, the Second Affiliated Hospital of Chongqing Medical University, Chongqing, 400010, China · State Key Laboratory of Respiratory Health and Multimorbidity, Institute of Basic Medical Sciences & School of Basic Medicine, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing, 100005, China · Department of Medical Oncology, the First Hospital of China Medical University, Shenyang, 110001, China +3

  27. Graph Transformer-Based Pathway Embedding for Cancer Prognosis

    Apr 17, 2026Koushik Howlader, Md Tauhidul Islam, Wei LeMulti-Omic Integration

    Iowa State University, Iowa, USA · Stanford University, CA, USA

  28. Detecting and explaining clinical-omics inconsistencies to improve patient cohort stratification: an application to Parkinson's disease

    Jul 4, 2025José A. Pardo-Pérez, Tomás Bernal, Jaime Ñiguez +5Multi-Omic IntegrationDisease

    Department of Information and Communications Engineering, Faculty of Computer Science, University of Murcia, Murcia, Spain. · Department of Clinical and Movement Neurosciences, UCL Queen Square Institute of Neurology, London, UK. · Department of Neurology, Washington University School of Medicine, Saint Louis, MO, 63110, USA. +1

  29. Batch effects can impair federated learning in multi-center omics studies

    Dec 8, 2024Yuliya Burankova, Julian Klemm, Jens J. G. Lohmann +5Federated LearningMulti-Omic Integration

    Institute for Computational Systems Biomedicine, University of Hamburg, 22761 Hamburg, Germany · Chair of Proteomics and Bioanalytics, TUM School of Life Sciences, Technical University of Munich, 85354 Freising, Germany · Department of Mathematics and Computer Science, University of Southern Denmark, 5230 Odense, Denmark +3