Pathology Foundation Models

Overview

Pathology foundation models learn visual patterns from digital tissue slides, often using self-supervised learning on image patches and whole-slide images, or aligning images with text and molecular data. Researchers adapt these representations with frozen-feature probes, fine-tuning, and multiple-instance learning for tasks such as tumor classification, cell segmentation, biomarker prediction, and survival analysis. Evaluation spans benchmarks such as HEST and TCGA, external hospital cohorts, and increasingly prospective studies and pathologist reader evaluations. Models can transfer across many tasks, but performance may shift with tissue type, staining, or institution, while biological interpretability and the trade-off between model size, efficiency, and clinical reliability remain open challenges.

Latest papers

CardsList

93 papers11 papers in the last four weeks, up 57% on the four weeks before. 0.1% of all new papers.

  1. CellPlex: Benchmarking Single-Cell Spatial Proteomics Prediction from H&E

    Nov 2, 2026Zijun Gao, Yijiang Chen, Xiangde Luo +1Virtual StainingMedical Image Benchmarks

  2. Knowledge-structured and evidence-aware semantic self-distillation for glomerular pathology foundation model

    Oct 28, 2026Qiming He, Jing Li, Zihan Wang +24Pathology Foundation ModelsMedical VLMs

  3. AdaptMIL: Domain Adaptation for Multiple Instance Learning in Digital Pathology

    Oct 20, 2026Ben Vardi, Dana Schonberger, Yuval Friedmann +4Domain AdaptationComputational Pathology

  4. Scaling Vision Foundation Models for Toxicologic Pathology

    Oct 19, 2026Jessica Loo, Theodoros Pissas, Byunghak Kang +7Pathology Foundation ModelsComputational Pathology

  5. Multi-scale Fusion of Fast Vision Mamba and Foundation Model Features for Patch-Level Gleason Grading in Computational Pathology

    Oct 19, 2026Zihe Zhang, Weimiao Yu, Piumi Don SimongeHistopathology Image ClassificationProstate Cancer Grading

  6. Input- and Feature-Space Correction for Cross-Hospital IHC Grading

    Oct 15, 2026Jongwoon Lee, Jhair Gallardo, Christopher KananDomain AdaptationHistopathology Image Classification

  7. Pathology foundation models for training-free case retrieval in salivary gland tumors

    Oct 15, 2026Maximilian J. Roesel, Niklas Kiermeyer, Philipp Keyl +1Computational PathologyMedical Image Retrieval

  8. FOCUS: A Subspecialty Foundation Model for Intraoperative Central Nervous System Pathology

    Oct 12, 2026Xing Liu, Yifan Guo, Hongtai Lv +18Pathology Foundation ModelsComputational Pathology

  9. Scaling Multi-Teacher Distillation for Digital Pathology

    Oct 8, 2026Sofiène Boutaj, Pierre Marza, Varun Belagali +3Multi-Teacher Knowledge DistillationPathology Foundation Models

  10. SCALE: Synthetic Calibration via Agreement Labeling in Embedding Space

    Sep 30, 2026Wenjun Liu, Saeed HassanpourComputational PathologyPathology Foundation Models

  11. HERO: Histology Encoder for Robust Representation in Oncology

    Sep 28, 2026Zhi Li, Eghbal Amidi, Yating Cheng +11Computational PathologyDomain Generalization

  12. Role-Guided MOE for Encoder-Level Pathology Representation Learning in WSI Classification

    Sep 28, 2026Xinyu Ma, Xing Yang, Hongtao Jin +4Pathology Foundation ModelsMixture-of-Experts Models

  13. Can Protein-Derived Knowledge Improve Pathology Foundation Models?

    Sep 27, 2026Di Zhang, Zhangpeng Gong, Jiashuai Liu +10Pathology Foundation ModelsComputational Pathology

  14. Do Center Biases Propagate? Robustness of Pathology Foundation Models in Whole-Slide Image Classification

    Sep 23, 2026Ilán Carretero, Pablo Meseguer, Rocío del Amor +1Batch Effect CorrectionPathology Foundation Models

  15. WILSON - Multi-magnification composites as a foundation for patient-level pathology analysis and diagnostic text generation

    Sep 20, 2026Saghir Alfasly, Wataru Uegami, Sobhan Hemati +17Pathology Foundation ModelsComputational Pathology

  16. TAP-Path: Task-Adaptive Structural and Token Pruning for Efficient and Trustworthy Pathology Foundation Models

    Sep 3, 2026Mehedi Hasan, Ashfak Yeafi, Md Khairul IslamComputational PathologyPathology Foundation Models

  17. Seeing Beyond the Lesion: Disease Recognition from Reactive CNS Tissue

    Sep 2, 2026Jan Schnorrenberg, Jan Ernsting, Enrico Küllenberg +3Computational PathologyPathology Foundation Models

  18. Morphology signal in whole slide image foundation models can automatically triage slides

    Sep 2, 2026Ayushi Sinha, Shashank Yadav, Benjamin Holmes +9Computational PathologyPathology Foundation Models

  19. EXPOSE: Explainable and Domain-Robust Embeddings from Pathology Vision Foundation Models using Sparse Autoencoders

    Aug 28, 2026Anja Witte, Maximilian Lennartz, Jan Baumbach +4Computational PathologyPathology Foundation Models

  20. VIPER: An Expert-Curated Benchmark for Vision-Language Models in Veterinary Pathology

    Aug 26, 2026Luca L. Weishaupt, Simone de Brot, Javier Asin +9VLM EvaluationPathology Visual Question Answering

  21. CellPath-Bench: A Multidimensional Benchmark for Whole-Slide Cellular Representations in Pathology Foundation Models

    Aug 21, 2026Bokai Zhao, Yiyang Zhang, Hanqing Chao +6Computational PathologyPathology Foundation Models

  22. DistillPath: An Efficient 22M Distilled Pathology Encoder Approaching Large Foundation Model Performance

    Aug 18, 2026Ramon Kaspar, Andrey Ignatov, Valentina BoevaPathology Foundation ModelsEfficient ViTs

  23. Lymphocyte Mimicry Correction via Region-Level Tissue Reasoning and Unbalanced Optimal Transport

    Aug 17, 2026Xiang Li, Yuqi Wang, Casey C. Heirman +2Computational PathologyHistopathology Image Classification

  24. CytoFormer: A Molecularly Supervised Cell Foundation Model for Histopathology Cell Classification

    Aug 17, 2026Jialu Yao, Songhao Li, Alina Yu +1Histopathology Image ClassificationPathology Foundation Models