RAG Security

Retrieval-Augmented Generation (RAG) systems are deployed across federal agencies for citizen-facing tax guidance, benefits eligibility, and legal information, where a single incorrect number causes direct financial harm. This paper proves that all embedding-based RAG defenses share a fundamental blind spot: changing a tax deduction by $50,000 produces cosine similarity 0.9998, invisible to every known detection threshold. Across 174 manipulation pairs and two embedding models, the mean sensitivity gap is 1,459x. The blind spot is confirmed on real IRS documents.The root cause is that embeddings encode topic, not numerical precision. RAGShield sidesteps this by operating on extracted values directly: a pattern-based engine identifies dollar amounts and percentages in government text, links each value to its governing entity through two-pass context propagation (99.8% entity detection on 2,742 real IRS passages), and verifies every claim against a cross-source registry built from the corpus itself. A temporal tracker flags value changes that fall outside known government update schedules. On 430 attacks generated from real IRS document content, RAGShield detects every one (0.0% ASR, 95% CI [0%, 1%]) while embedding-based defenses miss 79-90% of the same attacks.

RAG typically assumes centralized access to documents, which breaks down when knowledge is distributed across private data silos. We propose a secure Federated RAG system built using Flower that performs local silo retrieval, while server-side aggregation and text generation run inside an attested, confidential compute environment, enabling confidential remote LLM inference even in the presence of honest-but-curious or compromised servers. We also propose a cascading inference approach that incorporates a non-confidential third-party model (e.g., Amazon Nova) as auxiliary context without weakening confidentiality.

Retrieval-Augmented Generation (RAG) improves large language model applications by grounding generation in retrieved evidence, but also introduces corpus poisoning as a new attack surface. In this setting, an adversary injects or edits passages so that they enter the Top-$K$ results for target queries and influence downstream generation. Existing defences often rely on content filtering, auxiliary models, or generator-side reasoning, which complicates deployment. We propose ProGRank, a post hoc, training-free retriever-side defence for dense-retriever RAG. ProGRank stress-tests each query--passage pair under mild randomized perturbations, extracts probe gradients from a small fixed parameter subset, and derives two instability signals: representational consistency and dispersion risk. It then combines these signals with a score gate for reranking. ProGRank preserves the original passage content, requires no retraining, and supports a surrogate-based variant when the deployed retriever is unavailable. Experiments across datasets, retrievers, attacks, and retrieval-stage and end-to-end settings show that ProGRank improves robustness and maintains a favorable robustness--utility trade-off, including under adaptive evasive attacks.

Retrieval-Augmented Generation (RAG) significantly mitigates the hallucinations and domain knowledge deficiency in large language models by incorporating external knowledge bases. However, the multi-module architecture of RAG introduces complex system-level security vulnerabilities. Guided by the RAG workflow, this paper analyzes the underlying vulnerability mechanisms and systematically categorizes core threat vectors such as data poisoning, adversarial attacks, and membership inference attacks. Based on this threat assessment, we construct a taxonomy of RAG defense technologies from a dual perspective encompassing both input and output stages. The input-side analysis reviews data protection mechanisms including dynamic access control, homomorphic encryption retrieval, and adversarial pre-filtering. The output-side examination summarizes advanced leakage prevention techniques such as federated learning isolation, differential privacy perturbation, and lightweight data sanitization. To establish a unified benchmark for future experimental design, we consolidate authoritative test datasets, security standards, and evaluation frameworks. To the best of our knowledge, this paper presents the first end-to-end survey dedicated to the security of RAG systems. Distinct from existing literature that isolates specific vulnerabilities, we systematically map the entire pipeline-providing a unified analysis of threat models, defense mechanisms, and evaluation benchmarks. By enabling deep insights into potential risks, this work seeks to foster the development of highly robust and trustworthy next-generation RAG systems.

Retrieval augmented generation systems have become an integral part of everyday life. Whether in internet search engines, email systems, or service chatbots, these systems are based on context retrieval and answer generation with large language models. With their spread, also the security vulnerabilities increase. Attackers become increasingly focused on these systems and various hacking approaches are developed. Manipulating the context documents is a way to persist attacks and make them affect all users. Therefore, detecting compromised, adversarial context documents early is crucial for security. While supervised approaches require a large amount of labeled adversarial contexts, we propose an unsupervised approach, being able to detect also zero day attacks. We conduct a preliminary study to show appropriate indicators for adversarial contexts. For that purpose generator activations, output embeddings, and an entropy-based uncertainty measure turn out as suitable, complementary quantities. With an elementary statistical outlier detection, we propose and compare their detection abilities. Furthermore, we show that the target prompt, which the attacker wants to manipulate, is not required for a successful detection. Moreover, our results indicate that a simple context summary generation might even be superior in finding manipulated contexts.

Retrieval-Augmented Generation (RAG) enables large language models to use external knowledge, but outsourcing the RAG service raises privacy concerns for both data owners and users. Privacy-preserving RAG systems address these concerns by performing secure top-$k$ retrieval, which is typically implemented using secure sorting to identify relevant documents. However, existing systems face challenges supporting arbitrary $k$ due to their inability to change $k$, new security issues, and in particular, efficiency degradation with large $k$. This is a significant limitation because applications such as finance, law, and healthcare require a $k$ that is large enough to cause huge overhead for existing systems. Also, modern long-context models generally achieve higher accuracy with larger retrieval sets. We propose P$^2$RAG, an efficient privacy-preserving RAG service that supports arbitrary top-$k$ retrieval. Unlike existing systems, P$^2$RAG avoids sorting candidate documents. Instead, it uses an interactive bisection method to determine the set of top-$k$ documents. For security, P$^2$RAG uses secret sharing on two semi-honest non-colluding servers to protect the data owner's database and the user's prompt. It enforces restrictions and verification to defend against malicious users and tightly bounds the information leakage of the database. The experiments show that P$^2$RAG is 3--300$\times$ faster than the state-of-the-art PRAG for $k = 16$--$1024$.

Retrieval-Augmented Generation (RAG) systems extend large language models (LLMs) with external knowledge sources but introduce new attack surfaces through the retrieval pipeline. In particular, adversaries can poison retrieval corpora so that malicious documents are preferentially retrieved at inference time, enabling targeted manipulation of model outputs. We study gradient-guided corpus poisoning attacks against modern RAG pipelines and evaluate retrieval-layer defenses that require no modification to the underlying LLM. We implement dual-document poisoning attacks consisting of a sleeper document and a trigger document optimized using Greedy Coordinate Gradient (GCG). In a large-scale evaluation on the Security Stack Exchange corpus (67,941 documents) with 50 attack attempts, gradient-guided poisoning achieves a 38.0 percent co-retrieval rate under pure vector retrieval. We show that a simple architectural modification, hybrid retrieval combining BM25 and vector similarity, substantially mitigates this attack. Across all 50 attacks, hybrid retrieval reduces gradient-guided attack success from 38 percent to 0 percent without modifying the model or retraining the retriever. When attackers jointly optimize payloads for both sparse and dense retrieval signals, hybrid retrieval can be partially circumvented, achieving 20-44 percent success, but still significantly raises attack difficulty relative to vector-only retrieval. Evaluation across five LLM families (GPT-5.3, GPT-4o, Claude Sonnet 4.6, Llama 4, and GPT-4o-mini) shows attack success ranging from 46.7 percent to 93.3 percent. Cross-corpus evaluation on the FEVER Wikipedia dataset (25 attacks) yields 0 percent attack success across all retrieval configurations.

In conversational search systems, a key component is to determine and clarify the intent behind complex queries. We view intent clarification in light of the exploratory search paradigm, where users, through an iterative, evolving process of selection, exploration and retrieval, transform a visceral or conscious need into a formalized one. Augmenting the clarification component with a retrieval step (retrieval-augmented intent clarification) can seriously enhance clarification performance, especially in domains where Large Language Models (LLMs) lack parametric knowledge. However, in more sensitive domains, such as healthcare, government (e.g. FOIA search) or legal contexts, the retrieval database may contain sensitive information that needs protection. In this paper, we explore the research challenge of developing a retrieval-augmented conversational agent that can act as a mediator and gatekeeper for the sensitive collection. To do that, we also need to know what we are protecting and against what. We propose to tackle this research challenge in three steps: 1) define an attack model, 2) design sensitivity-aware defenses on the retrieval level and 3) develop evaluation methods to measure the trade-off between the level of protection and the system's utility.

Retrieval-Augmented Generation (RAG) systems are essential to contemporary AI applications, allowing large language models to obtain external knowledge via vector similarity search. Nevertheless, these systems encounter a significant security flaw: hubness - items that frequently appear in the top-$k$ retrieval results for a disproportionately high number of varied queries. These hubs can be exploited to introduce harmful content, alter search rankings, bypass content filtering, and decrease system performance. We introduce hubscan, an open-source security scanner that evaluates vector indices and embeddings to identify hubs in RAG systems. Hubscan presents a multi-detector architecture that integrates: (1) robust statistical hubness detection utilizing median/Median Absolute Deviation (MAD)-based z-scores, (2) cluster spread analysis to assess cross-cluster retrieval patterns, (3) stability testing under query perturbations, and (4) domain-aware and modality-aware detection for category-specific and cross-modal attacks. Our solution accommodates several vector databases (FAISS, Pinecone, Qdrant, Weaviate) and offers versatile retrieval techniques, including vector similarity, hybrid search, and lexical matching with reranking capabilities. We evaluate hubscan on Food-101, MS-COCO, and FiQA adversarial hubness benchmarks constructed using state-of-the-art gradient-optimized and centroid-based hub generation methods. Hubscan achieves 90% recall at a 0.2% alert budget and 100% recall at 0.4%, with adversarial hubs ranking above the 99.8th percentile. In testing, domain-scoped scanning recovered 100% of targeted attacks that evaded global detection. Production validation on 1M real web documents from MS MARCO demonstrates significant score separation between clean documents and adversarial content.

Current stateless defences for multimodal agentic RAG fail to detect adversarial strategies that distribute malicious semantics across retrieval, planning, and generation components. We formulate this security challenge as a Partially Observable Markov Decision Process (POMDP), where adversarial intent is a latent variable inferred from noisy multi-stage observations. We introduce MMA-RAG^T, an inference-time control framework governed by a Modular Trust Agent (MTA) that maintains an approximate belief state via structured LLM reasoning. Operating as a model-agnostic overlay, MMA-RAGT mediates a configurable set of internal checkpoints to enforce stateful defence-in-depth. Extensive evaluation on 43,774 instances demonstrates a 6.50x average reduction factor in Attack Success Rate relative to undefended baselines, with negligible utility cost. Crucially, a factorial ablation validates our theoretical bounds: while statefulness and spatial coverage are individually necessary (26.4 pp and 13.6 pp gains respectively), stateless multi-point intervention can yield zero marginal benefit under homogeneous stateless filtering when checkpoint detections are perfectly correlated.

The rapid proliferation of AI-generated content on the Web presents a structural risk to information retrieval, as search engines and Retrieval-Augmented Generation (RAG) systems increasingly consume evidence produced by the Large Language Models (LLMs). We characterize this ecosystem-level failure mode as Retrieval Collapse, a two-stage process where (1) AI-generated content dominates search results, eroding source diversity, and (2) low-quality or adversarial content infiltrates the retrieval pipeline. We analyzed this dynamic through controlled experiments involving both high-quality SEO-style content and adversarially crafted content. In the SEO scenario, a 67% pool contamination led to over 80% exposure contamination, creating a homogenized yet deceptively healthy state where answer accuracy remains stable despite the reliance on synthetic sources. Conversely, under adversarial contamination, baselines like BM25 exposed $\sim$19% of harmful content, whereas LLM-based rankers demonstrated stronger suppression capabilities. These findings highlight the risk of retrieval pipelines quietly shifting toward synthetic evidence and the need for retrieval-aware strategies to prevent a self-reinforcing cycle of quality decline in Web-grounded systems.

When answering user queries, LLMs often retrieve knowledge from external sources stored in retrieval-augmented generation (RAG) databases. These are often populated from unvetted sources, e.g. the open web, and can contain maliciously crafted data. This paper studies attacks that can manipulate the context retrieved by LLMs from such RAG databases. Prior work on such context manipulation primarily injects false or toxic content, which can often be detected by fact-checking or linguistic analysis. A more subtle threat, which we call epistemic bias injection (EBI), is where adversaries inject factually correct yet epistemically biased passages that systematically favor one side of an open-ended issue. Although linguistically coherent and truthful, such adversarial passages effectively crowd out alternative viewpoints during retrieval from the RAG and push LLM outputs towards an attack-desired stance. As a core contribution, we propose a novel characterization of the problem: We give a geometric metric that quantifies stance polarity and epistemic bias. This metric can be computed directly on embeddings of text passages. Leveraging it, we construct EBI attacks and develop a lightweight prototype defense called BiasDef for them. We evaluate them both on a comprehensive benchmark constructed from public question answering datasets. Our results show that: (1) the proposed attack induces significant stance polarity shifts, effectively evading existing retrieval-based sanitization defenses, and (2) BiasDef substantially reduces adversarial retrieval and epistemic bias in LLM's answers. Overall, this demonstrates the new threat as well as the ease of employing epistemic bias metrics for filtering in RAG-enabled LLMs.

Existing data poisoning attacks on retrieval-augmented generation (RAG) systems scale poorly because they require costly optimization of poisoned documents for each target phrase. We introduce Eyes-on-Me, a modular attack that decomposes an adversarial document into reusable Attention Attractors and Focus Regions. Attractors are optimized to direct attention to the Focus Region. Attackers can then insert semantic baits for the retriever or malicious instructions for the generator, adapting to new targets at near zero cost. This is achieved by steering a small subset of attention heads that we empirically identify as strongly correlated with attack success. Across 18 end-to-end RAG settings (3 datasets $\times$ 2 retrievers $\times$ 3 generators), Eyes-on-Me raises average attack success rates from 21.9 to 57.8 (+35.9 points, 2.6$\times$ over prior work). A single optimized attractor transfers to unseen black box retrievers and generators without retraining. Our findings establish a scalable paradigm for RAG data poisoning and show that modular, reusable components pose a practical threat to modern AI systems. They also contribute to interpretability research by revealing a strong link between attention concentration and model outputs.

Retrieval-Augmented Generation (RAG) systems are increasingly deployed in high-stakes domains, where safety depends not only on how a system answers, but also on whether a query should be answered given a knowledge base (KB). Out-of-domain (OOD) queries can cause dense retrieval to surface weakly related context and lead the generator to produce fluent but unjustified responses. We study lightweight, KB-aligned OOD detection as an always-on gate for RAG systems. Our approach applies PCA to KB embeddings and scores queries in a compact subspace selected either by explained-variance retention (EVR) or by a separability-driven t-test ranking. We evaluate geometric semantic-search rules and lightweight classifiers across 16 domains, including high-stakes COVID-19 and Substance Use KBs, and stress-test robustness using both LLM-generated attacks and an in-the-wild 4chan attack. We find that low-dimensional detectors achieve competitive OOD performance while being faster, cheaper, and more interpretable than prompted LLM-based judges. Finally, human and LLM-based evaluations show that OOD queries primarily degrade the relevance of RAG outputs, showing the need for efficient external OOD detection to maintain safe, in-scope behavior.

Retrieval-Augmented Generation (RAG) is a promising technique for applying LLMs to proprietary domains. However, retrieved documents may contain sensitive knowledge, posing risks of privacy leakage in generative results. Thus, effectively erasing private information from retrieved documents is a key challenge for RAG. Unlike traditional text anonymization, RAG should consider: (1) the inherent multi-document reasoning may face de-anonymization attacks; (2) private knowledge varies by scenarios, so users should be allowed to customize which information to erase; (3) preserving sufficient publicly available knowledge for generation tasks. This paper introduces the privacy erasure task for RAG and proposes Eraser4RAG, a private knowledge eraser which effectively removes user-defined private knowledge from documents while preserving sufficient public knowledge for generation. Specifically, we first construct a global knowledge graph to identify potential knowledge across documents, aiming to defend against de-anonymization attacks. Then we randomly split it into private and public sub-graphs, and fine-tune Flan-T5 to rewrite the retrieved documents excluding private triples. Finally, PPO algorithm optimizes the rewriting model to minimize private triples and maximize public triples retention. Experiments on four QA datasets demonstrate that Eraser4RAG achieves superior erase performance than GPT-4o.

Retrieval-Augmented Generation (RAG) enhances Large Language Models (LLMs) by retrieving relevant information from external knowledge bases to provide more accurate, contextually informed, and up-to-date responses. However, this reliance on external knowledge introduces significant security vulnerabilities, as many RAG systems (e.g., Google Search) rely on large and unsanitized data repositories (e.g., Reddit). In this paper, we unveil a novel threat in which attackers steer the RAG system's response by injecting malicious passages into its knowledge base. When a user's query contains attacker-specified trigger words, the RAG retrieves and refers to these malicious passages, enabling the attacker to steer the response without altering the user input or modifying the RAG weights. BadRAG operates in two phases: (i) malicious passages are optimized to be retrieved exclusively when trigger words appear in user queries; (ii) these passages are meticulously crafted to achieve adversarial generation objectives, including denial of service, sentiment manipulation, context leakage, and tool misuse. Our experiments show that injecting just 10 malicious passages (0.04% of the external corpora) achieves a 98.2% retrieval success rate and increases negative response rates from 0.22% to 72% for queries containing triggers.