Skin Lesion Segmentation

Skin cancer is a major global health concern, and early detection and accurate lesion delineation are important for effective diagnosis and treatment planning. Automated skin lesion analysis can assist dermatologists, with lesion segmentation serving as a fundamental step in computer-aided diagnostic systems. Conventional deep learning-based segmentation models typically rely on centralized training, where images and their corresponding segmentation masks are collected on a central server. Such data aggregation raises privacy concerns in medical applications and requires substantial centralized computational resources. To address these limitations, we investigate the feasibility of federated learning for privacy-preserving skin lesion segmentation. The training and validation sets of the ISIC 2018 Skin Lesion Segmentation Challenge dataset are used to simulate a distributed learning environment and develop a federated segmentation model. The resulting model is evaluated on the ISIC 2018 test set and the PH2 dataset to assess its performance and generalizability. Experimental results demonstrate that the federated model achieves performance comparable to centralized training while consistently improving upon the locally trained models. These findings demonstrate the potential of federated learning for collaborative skin lesion segmentation without requiring centralized aggregation of medical images.

Handcrafted preprocessing is widely employed in automated dermoscopic analysis to suppress imaging artifacts and enhance lesion visibility. Nevertheless, its actual contribution to modern real-time models remains unclear, particularly when evaluation protocols do not adequately control correlations among images of the same lesion. This study presents a leakage-controlled, lesion-disjoint evaluation of dermoscopic preprocessing and augmentation for joint multi-class lesion classification and instance segmentation using a fixed nano-scale YOLO26 segmentation model (YOLO26n-seg). From HAM10000 (10,015 images), quality control yields 10,013 valid image-mask pairs from 7,468 unique lesions, partitioned into mutually exclusive sets by lesion identity. With the architecture, resolution, training budget, and evaluation protocol held fixed, we compare minimally processed images plus online augmentation against offline class balancing, DullRazor-CLAHE preprocessing, and raw-processed hybrid views, over three random seeds. On the lesion-disjoint test set, the raw baseline achieves a mask mAP$_{50:95}$ of $0.5636 \pm 0.0234$, a Dice score of $0.9356 \pm 0.0024$, and a macro-F1 score of $0.6917 \pm 0.0202$. Offline augmentation does not improve the mean performance, while the combined and hybrid strategies reduce both class-aware segmentation and classification accuracy. At only 2.69 million parameters, the model runs at approximately 50 frames per second. Under a leakage-controlled, lesion-disjoint protocol with all non-input factors held fixed, minimally processed dermoscopic images combined with standard online augmentation deliver a better accuracy-efficiency trade-off than increasingly complex deterministic preprocessing, which yields no consistent joint benefit across three seeds on HAM10000.

Contour initialization and numerical stopping can jointly affect the evaluation of active-contour segmentation. We examine their interaction using the open-source scikit-image Chan-Vese implementation on a resized ISIC 2017 mirror. A fixed development set of 100 images selects a common input channel; all 600 images in the repository's held-out partition are then evaluated. Otsu thresholding is compared with checkerboard-, disk-, and Otsu-initialized contours under default and tighter level-set tolerances. At the default tolerance, Otsu initialization increases mean image Dice from 0.6011 to 0.6660 relative to checkerboard initialization, a paired difference of 0.0649 (95% image-bootstrap interval [0.0452, 0.0860]). Otsu thresholding alone achieves 0.6897. The default disk initializer stops after one iteration on 471 images. Tightening the tolerance reduces the Otsu-seed advantage over checkerboard initialization to 0.0197, with most runs reaching the 500-iteration limit. The default-tolerance advantage also reverses between small- and large-lesion strata. These findings show that an improvement over a generic initializer can coexist with deterioration relative to the threshold baseline. Evaluations should retain the unrefined mask as a comparator and report the initial-field definition, stopping tolerance, and observed iteration counts together.

Accurate segmentation of polyps and skin lesions is pivotal for clinical diagnosis, yet existing methods struggle with low contrast, ambiguous boundaries, and cross-domain distribution discrepancies. Discriminative networks and most diffusion-based segmentation approaches predict standalone binary masks, leaving the visual priors of large-scale pretrained generative models largely unexploited. We propose InstEditSeg, a unified generative framework that reformulates medical segmentation as an instruction-driven image editing problem. Instead of emitting a mask, the model renders a color-coded overlay on the original image, conditioned on a textual instruction, so that the edited output aligns with the natural image distribution learned by latent diffusion models and mitigates the domain gap between natural and medical imagery. To recover fine anatomical structures, we introduce DINOv3 as an auxiliary visual encoder and a DINO Feature Guidance Block that builds a multi-scale feature pyramid. The pyramid is fused into the diffusion U-Net by channel concatenation and zero-initialized convolution so that hierarchical discriminative priors can be injected without perturbing the pretrained weights. A dual-branch classifier-free guidance strategy requiring only two forward passes per denoising step reduces inference cost. On polyp and skin lesion benchmarks the framework achieves accuracy competitive with strong discriminative baselines, and it further demonstrates concrete advantages of the generative formulation: notably better cross-domain generalization on unseen data, more complete multi-lesion segmentation, instruction-conditioned task control, and sampling flexibility. We also analyze the strengths and limitations of the paradigm, including its color sensitivity and unsupported attribute-conditioned selection. Code is available at: https://github.com/wincharm001/InstEditSeg.

Skin lesion segmentation is a key task in computer-aided dermatological diagnosis, where accuracy directly impacts downstream analysis and disease classification. However, dermoscopic images are challenging due to blurred boundaries, low contrast, large shape variations, and artifacts such as hair and shadows. Recently, diffusion models have shown strong performance in medical image segmentation thanks to their progressive denoising and distribution modeling capabilities. Nevertheless, existing diffusion-based methods still suffer from limited cross-level feature interaction and insufficient boundary detail recovery. To address these issues, we propose MLFFM-SegDiff, a multi-level feature fusion diffusion model for skin lesion segmentation. Built on a diffusion framework, the method introduces a dual-path U-Net encoder, a Multi-Level Feature Fusion Module (MLFFM), and a boundary-sensitive loss function. The dual-path encoder enhances interaction between noisy mask features and dermoscopic image features. MLFFM improves skip connections via attention, scale alignment, and adaptive cross-level fusion. These designs enable the decoder to jointly leverage shallow boundary cues and deep semantic representations, improving mask reconstruction quality. Experiments on ISIC2018, PH2, and HAM10000 demonstrate that MLFFM-SegDiff outperforms representative methods including DermoSegDiff, U-Net, and SwinUNETR across Accuracy, F1-score, Jaccard index, Recall, and Dice. In particular, it achieves an average Jaccard index of 0.8546 and Dice coefficient of 0.9207. These results validate the effectiveness of the proposed multi-level feature fusion strategy for improving lesion segmentation performance. The code will be released at https://github.com/Qacket/MLFFM-SegDiff.git after publication.

Automated segmentation of skin lesions using deep learning models for dermoscopic images can be very helpful in finding melanomas earlier than they would normally be detected. However, most deep learning methods available do not perform well. The aim of this paper is to present a parameter-efficient fine-tuning method called PEFT-MedSAM for adapting the Medical Segment Anything Model (MedSAM) to automatically segment dermoscopic skin lesions. The PEFT-MedSAM method uses only the lightweight mask decoder for training the model while keeping the pre-trained image encoder and prompt encoder frozen. The experiments performed on the ISIC 2018 benchmark dataset shows that PEFT-MedSAM obtains a dice coefficient of .9411 and an intersection over union value of .8918 when compared to both a fully trained U-Net baseline (.8715 dice coefficient) and zero-shot MedSAM inference (.8997 dice coefficient). The external validation of the model using PH2 dataset shows .9467 dice coefficient with +/- .0310 standard deviation. Supportive evidence for these claims include a p-value less than .0001 for Wilcoxon signed rank tests comparing the two datasets and bootstrap-estimated 95% confidence intervals of [.9364,.9447] that represent the estimated range of possible values for the average dice coefficient obtained by repeating the test. To increase clinical trustworthiness, we used Grad-CAM explainability along with a pointing game based evaluation methodology to evaluate the CNN baseline model on the validation set. The results showed that we had an accuracy rate of 98.27% on the validation set of 519 images and confirmed that the model classified regions containing skin lesions.

CNN- and Transformer-based architectures have achieved strong performance in medical image segmentation, but CNNs are limited in modeling long-range dependencies, while Transformers often suffer from quadratic computational and memory complexity. State space models, especially Mamba-based networks, offer an efficient alternative with linear sequence complexity. However, existing Mamba segmentation models still face two limitations: pixel-wise directional scanning can disrupt local 2D spatial structure, and simple summation-based fusion of scan directions cannot adapt well to diverse object sizes, shapes, and boundaries. To address these issues, we propose \textit{Patch-MoE Mamba}, a patch-ordered mixture-of-experts state space architecture for medical image segmentation. It introduces a hierarchical patch-ordered scanning mechanism that preserves local spatial neighborhoods while capturing multi-scale context, and an MoE-based directional fusion module that adaptively combines multiple Mamba scanner outputs using four directional experts, a learnable concatenation expert, and residual directional aggregation. Experiments on five public polyp segmentation benchmarks and the ISIC 2017/2018 skin lesion segmentation datasets demonstrate the effectiveness and generality of Patch-MoE Mamba.

Accurate skin lesion segmentation is vital for dermoscopic Computer-Aided Diagnosis. However, visual ambiguity and morphological irregularity often defeat spatial modeling, necessitating multi-domain architectures. Existing paradigms frequently overlook the active use of prediction uncertainty, leading to deterministic frameworks that suffer from blind cross-domain fusion and overfit to label noise. To address these issues, we propose the Uncertainty-Guided Dual-Domain Network (UGDD-Net). UGDD-Net introduces a novel "Glance-and-Gaze" mechanism to transform uncertainty into an active guiding signal. Specifically, the Uncertainty-Guided Bi-directional Feature Fusion (UGBFF) module uses pixel-level uncertainty to modulate spatial-spectral interactions. The Uncertainty-Guided Graph Refinement (UGGR) module constructs a topology-aware graph to propagate reliable semantic consensus and refine uncertain nodes. Finally, the Uncertainty-Guided Margin-Adaptive Loss (UGML) enforces strict constraints on confident pixels while relaxing penalties on uncertain ones to improve statistical calibration. Extensive experiments on ISIC2017, ISIC2018, PH2, and HAM10000 datasets demonstrate that UGDD-Net achieves state-of-the-art performance, especially on "Hard Samples". Our uncertainty maps align with expert inter-observer variability, providing robust interpretability for human-machine collaborative diagnosis.

Recent segmentation models have demonstrated promising efficiency by aggressively reducing parameter counts and computational complexity. However, these models often struggle to accurately delineate fine lesion boundaries and texture patterns essential for early skin cancer diagnosis and treatment planning. In this paper, we propose MambaLiteUNet, a compact yet robust segmentation framework that integrates Mamba state space modeling into a U-Net architecture, along with three key modules: Adaptive Multi-Branch Mamba Feature Fusion (AMF), Local-Global Feature Mixing (LGFM), and Cross-Gated Attention (CGA). These modules are designed to enhance local-global feature interaction, preserve spatial details, and improve the quality of skip connections. MambaLiteUNet achieves an average IoU of 87.12% and average Dice score of 93.09% across ISIC2017, ISIC2018, HAM10000, and PH2 benchmarks, outperforming state-of-the-art models. Compared to U-Net, our model improves average IoU and Dice by 7.72 and 4.61 points, respectively, while reducing parameters by 93.6% and GFLOPs by 97.6%. Additionally, in domain generalization with six unseen lesion categories, MambaLiteUNet achieves 77.61% IoU and 87.23% Dice, performing best among all evaluated models. Our extensive experiments demonstrate that MambaLiteUNet achieves a strong balance between accuracy and efficiency, making it a competitive and practical solution for dermatological image segmentation. Our code is publicly available at: https://github.com/maklachur/MambaLiteUNet.