Video-based Locomotion Analysis for Fish Health Monitoring

Precision aquaculture faces a "phenotyping bottleneck" in tracking high-resolution behavioral traits, as conventional methods cannot quantify instantaneous three-dimensional (3D) physical exertion. To address this, we present a high-throughput 3D behavioral phenotyping framework integrating deep learning object detection with binocular stereo vision for real-time monitoring of juvenile tilapia in high-density environments. The system automates non-contact body length estimation and reconstructs 3D swimming trajectories from absolute spatial coordinates. By eliminating 2D perspective distortions, this approach precisely quantifies 3D velocity and acceleration, marking the first estimation of true physical swimming speeds in free-roaming juveniles. Results show the framework successfully establishes circadian locomotor baselines, serving as an early warning system for physiological stress and providing an objective metric for fish vitality.

We present Video2SwimFish, an automated pipeline and benchmark for building controllable fish assets from real-fish videos for underwater embodied AI. Given synchronized multi-view videos of an individual fish, the pipeline reconstructs a metrically scaled deformable mesh from a VLM-selected canonical frame, generates internal articulation adapted to that individual's morphology through a VLM actor-critic loop, and extracts a Biological Locomotion Manifold (BLM) from the fish's observed midline curvature. The BLM provides a low-dimensional action space bounded by real-fish motion, enabling an individual swimming policy to be learned for each reconstructed fish. We release two paired datasets: synchronized top- and front-view recordings of 120 individual fish across 6 species, and the controllable assets and individual swimming policies derived from them. Because every asset is tied to the animal it came from, the dataset supports a benchmark that evaluates locomotion learning not only on task success but on fidelity to that individual in trajectory shape, body curvature, and tail-beat frequency, across trajectory following, reward-free swimming behavior transfer from video, and a downstream case study in which a simulated BlueROV underwater robot captures one of the assets. We find that task success and locomotion fidelity do not necessarily improve together: the method achieving the highest task completion is not the method achieving the highest locomotion fidelity, and we identify faithful reproduction of individual animal locomotion as an open challenge for the community. Project website: https://hangongchen.github.io/video2swimfish-web/.

Monitoring fish growth behavior provides relevant information about fish health in aquaculture and home aquariums. Yet, monitoring fish sizes poses different challenges, as fish are small and subject to strong refractive distortions in aquarium environments. Image-based measurement offers a practical, non-invasive alternative that allows frequent monitoring without disturbing the fish. In this paper, we propose a non-invasive refraction-aware stereo vision method to estimate fish length in aquariums. Our approach uses a YOLOv11-Pose network to detect fish and predict anatomical keypoints on the fish in each stereo image. A refraction-aware epipolar constraint accounting for the air-glass-water interfaces enables robust matching, and unreliable detections are removed using a learned quality score. A subsequent refraction-aware 3D triangulation recovers 3D keypoints, from which fish length is measured. We validate our approach on a new stereo dataset of endangered Sulawesi ricefish captured under aquarium-like conditions and demonstrate that filtering low-quality detections is essential for accurate length estimation. The proposed system offers a simple and practical solution for non-invasive growth monitoring and can be easily applied in home aquariums.