Interpretable Classification of Time Series Using Euler Characteristic Surfaces

Distinguishing periodic from chaotic dynamics in a time series is a fundamental challenge in both physics and engineering. Yet, end-to-end learned architectures must discover both a representation and a decision boundary from data, at substantial cost. We introduce TopTimeNet, which decouples these tasks: a fixed, non-learned stage extracts a $42$-dimensional geometric and topological descriptor from Takens delay embeddings and persistent homology, and a lightweight learnable stage performs classification. On a benchmark of $49$ nonlinear dynamical systems, a $1{,}638$-parameter configuration matches the mean accuracy of one with $33\times$ more trainable parameters. Additionally, this approach delivers mean accuracy comparable to convolutional neural networks and surpasses the average performance of converged Transformer models, while requiring three to four orders of magnitude fewer trainable parameters. Robustness also depends sharply on where noise is introduced: TopTimeNet degrades gracefully under perturbations to its precomputed features, but degrades sharply when noise is introduced into the raw signal and the full feature-extraction pipeline is recomputed, showing that robustness to perturbations of the precomputed features does not imply robustness of the complete raw-signal-to-prediction pipeline. These results show that decoupling fixed geometric and topological feature construction from a lightweight discriminative stage can achieve comparable classification accuracy with substantially fewer trainable parameters.

Scientific time series often encode predictive geometric structure, including connectivity, cycles, shell-like geometry, directional changes, and nonlinear neighborhoods, that standard dot-product attention does not explicitly represent. We introduce a topology-aware attention framework that adds such structure to attention logits using persistent homology (H0-H2), anchored Euler characteristic transforms, and kernel-Hilbert channels. A validation-gated local residual captures local topological signals, including a Zeng-style local H0 component, only when held-out validation data support the correction. Exact Vietoris-Rips computations and smooth topological surrogates are evaluated under a no-leakage protocol with train-only calibration, validation-only selection, and test-only reporting. We evaluate guarded topology-aware variants across three architecture families: lightweight attention/Ridge, PatchTSTForRegression, and TimeSeriesTransformerForPrediction. Experiments include synthetic benchmarks isolating higher-order topology and real datasets covering CO2, S&P 500 return-window geometry, and NASA IMS bearing degradation. The audit uses matched paired comparisons across seven dataset units, three random seeds, and three chronological splits, giving 63 paired units per architecture and 189 paired units overall. Topology-aware models show positive paired effects when geometry is predictive, with heterogeneous magnitude across datasets and architectures. Lightweight attention/Ridge improves in 46 of 63 units, with mean relative RMSE reduction of 12.5% and paired randomization p=7.2e-4; PatchTST improves in 33 units and retains the baseline in 20 units, with 23.5% reduction and p=3.5e-5; and TimeSeriesTransformer improves in 47 units, with 47.8% reduction and p<1e-4. The results support topology as a validation-selected, architecture-compatible inductive bias.

Epileptic seizure detection from EEG signals remains challenging due to the high dimensionality and nonlinear, potentially stochastic, dynamics of neural activity. In this work, we investigate whether features derived from topological data analysis (TDA) can improve the classification of brain states in preictal, ictal and interictal iEEG recordings from epilepsy patients using multichannel data. We analyze data from 55 patients, significantly larger than many previous studies that rely on patient-specific models. Persistence diagrams derived from iEEG signals are vectorized using several TDA representations, including Carlsson coordinates, persistence images, and template functions. To understand how topological representations interact with modern machine learning pipelines, we conduct a large-scale ablation study across multiple iEEG frequency bands, dimensionality reduction techniques, feature representations, and classifier architectures. Our experiments show that dimension-reduced topological representations achieve up to 80% balanced accuracy for three-class classification. Interestingly, classical machine learning models perform comparably to deep learning models, achieving up to 79.17% balanced accuracy, suggesting that carefully designed topological features can substantially reduce model complexity requirements. In contrast, pipelines preserving the full multichannel feature structure exhibit severe overfitting due to the high-dimensional feature space. These findings highlight the importance of structure-preserving dimensionality reduction when applying topology-based representations to multichannel neural data.