Topological Representation Learning

Overview

The field studies how to encode and learn data structure that ordinary distances or pairwise graphs can miss, such as loops, connected components, and relations among groups of points. Common approaches use persistent homology and persistence diagrams, spectral features from graph or sheaf Laplacians, and neural networks on simplicial or cellular complexes; these can serve as input features, training objectives, or architectural building blocks. The goal is to make representations more faithful to underlying shape and connectivity, supporting tasks from graph and point-cloud learning to medical imaging and multimodal models. Results are promising across varied benchmarks, but computational cost and whether models learn genuine topology rather than dataset-specific combinatorial patterns remain open challenges.

Latest papers

CardsList

67 papers11 papers in the last four weeks, up 22% on the four weeks before. 0.1% of all new papers.

  1. Escaping the Phylogenetic Trap: Persistent Homology Enables Cross-Species Ion Channel Classification via Multimodal Graph Neural Networks

    Oct 21, 2026Arezoo Bybordi, Favour Achimba, Mariam Gelashvili +4OOD GeneralizationProtein Representation Learning

  2. Learning Topology-Aware Representations for Mechanics-Relevant TPMS Metamaterials

    Oct 14, 2026Songlin Duan, Shuo Yang, Yujia Zheng +1Topological Representation Learning3D Representation Learning

  3. Persistence Positional Encoding: A Minimal Transformer Recipe for Persistence Diagrams

    Oct 13, 2026Eunwoo Heo, Ganghyun Kim, Jaejun YooTopological Representation LearningPersistent Homology

  4. Batch Before You Lift: Scalable Topological Deep Learning on Large Graphs

    Oct 8, 2026David Leko, Luka Benić, Guillermo Bernárdez +3Graph PartitioningTopological Representation Learning

  5. Mathematical Invariant-Enabled Topological Neural Networks for Molecular and Materials Property Prediction

    Oct 6, 2026Yiming Ren, Xiang Liu, Mustafa Hajij +2Materials Property PredictionMolecular Property Prediction

  6. Operational Abstractions of Neural Network Concepts via Topological Representations

    Oct 4, 2026Mathieu Pont, Christoph GarthDisentangled Representation LearningModel Editing

  7. Higher-Order Molecular Grammars for Generative and Foundation Models in Chemistry

    Oct 1, 2026Yiming Huang, Yujie Zeng, Vijay Prakash Dwivedi +4Graph Representation LearningMolecular Generation

  8. Graph Representation via Elements of Discrete Morse and Cobordism Theories

    Oct 1, 2026Jennifer Rozenblit, Chenguang Yang, Yuxin Liu +2Diffusion Model GuidanceTopological Representation Learning

  9. Higher-Order Positional Encodings for Graph Representation Learning

    Oct 1, 2026Caleb Stam, Aagrim Hoysal, Sanjukta KrishnagopalGraph Representation LearningPositional Encoding

  10. TopoEmbedX: A General Framework for Representation Learning on Topological Domains

    Sep 29, 2026Florian Frantzen, Ibrahem AlJabea, Ines Henriques-Cadby +3Topological Representation LearningGraph Embedding

  11. Topological Signatures of Cyber-Attack Classes in Natural Visibility Graph Representations of Network Traffic

    Sep 22, 2026Ali Melih Kanca, Ilker TurkerNetwork Intrusion DetectionGraph Classification

  12. Signed Graph Pre-Training and Prompt Learning

    Sep 22, 2026Zihan Mei, Rong Pan, Yuzhou Chen +1Prompt LearningGraph Representation Learning

  13. CableVLA: Simulation-Privileged Global-Local Representation Learning for Cable Routing

    Sep 22, 2026Zhifei Teng, Bo Feng, Xiang Zou +4Visuo-Tactile Representation LearningSim-to-Real Transfer

  14. COMPLEX: A Closed-Form Certified Embedding of Multiparameter Persistence Modules

    Sep 18, 2026Sushovan Majhi, Atish Mitra, Žiga Virk +1Topological Representation Learning

  15. Repurposing Unified Topological Signatures for Graph Representation Learning

    Sep 15, 2026Sanyam Sanjay Jain, Anshika Krishnatray, Aditya Sharma +1Graph Representation LearningGNN Expressivity

  16. Synergistic Fusion of Topological Structure and Temporal Semantics of Mobility for Urban Region Embedding

    Sep 8, 2026Namwoo Kim, Jeeyun Chang, Kanghoon Lee +1Feature Interaction ModelingGeospatial Representation Learning

  17. Topology-induced Operators Reveal Complementary Graph Representations without Training

    Sep 8, 2026Meng Qin, Jinqiang Cui, Hongwei Zheng +2Graph Representation LearningGraph Embedding

  18. Recovering topological information of light by topological learning

    Sep 6, 2026Benquan Wang, Trishita Das, Yuhan Peng +8Topological Representation LearningComputational Imaging

  19. Beyond Uniform Local Isometry and Topology: FactoMap for Disentangled Representations

    Aug 25, 2026Sohini Gupta, Michael Gao, Bahareh TolooshamsDisentangled Representation LearningLatent Space Geometry

  20. Structured Learning on Mapper Representations

    Aug 22, 2026George Babus, Farzana NasrinTopological Representation LearningTopological Data Analysis

  21. Learning Topological Features of Z^\widehat Z-invariants

    Aug 19, 2026Brandon Robinson, Shimal Harichurn, Fabian Ruehle +3Topological Representation Learning

  22. Look Before You Lift: Visual and Quantitative Diagnostics for Topological Deep Learning

    Aug 15, 2026Mathilde Papillon, Guillermo Bernárdez, Álvaro Ballón Barreiro +4Topological Representation LearningTopological Data Analysis

  23. Topological Simplification in Predictive Coding Networks

    Aug 3, 2026Adam Shaw, Jiayu Li, Michael Sperling +2Predictive CodingTopological Representation Learning

  24. Differentiable Lifting for Topological Neural Networks

    Aug 2, 2026Jorge Luiz Franco, Gabriel Duarte, Alexander Nikitin +3Graph Structure LearningGraph Representation Learning

  25. TopoFormer: Topology Meets Attention for Graph Learning

    Jul 30, 2026Md Joshem Uddin, Astrit Tola, Cuneyt Gurcan Akcora +1Graph Representation LearningGraph Classification

  26. TopoGR: Revealing and Preserving Latent Structure of Semantic ID in Generative Recommendation

    Jul 28, 2026Ziyu Zheng, Zhengshun Du, Yaming Yang +5Semantic ID RecommendationRecommender Systems