What-If Explanations Over Time: Counterfactuals for Time Series Classification

This paper proposes ConceptCF, a method for counterfactual generation that operates on human-interpretable concepts. In high-stakes domains such as healthcare and predictive maintenance, artificial intelligence models can increase efficiency and safety. Explainability is key to ensure these models rely on causal relationships rather than spurious correlations. Counterfactual explanations identify minimal modifications that would change a model's predictions. Existing methods for time series operate on individual points or subsequences without ensuring interpretability of the mutations. ConceptCF instead modifies meaningful concepts. As a result we can provide explanations in terms of these concepts, for example ``the model's prediction would be Sit' instead of Walk' if you increase the scale of the movement''. In this paper, the concepts are constructed through time series decomposition, resulting in concepts such as scale, and frequency bands. Counterfactuals are generated using a genetic algorithm that optimizes the concept mutations. Evaluation against five state-of-the-art approaches demonstrates that ConceptCF consistently achieves top-tier performance across validity, confidence, proximity, sparsity and plausibility metrics.

We present a new method for generating plausible counterfactual explanations for time series classification problems. The approach performs gradient-based optimization directly in the input space. To enforce plausibility, we integrate soft-DTW (dynamic time warping) alignment with $k$-nearest neighbors from the target class, which effectively encourages the generated counterfactuals to adopt a realistic temporal structure. The overall optimization objective is a multi-faceted loss function that balances key counterfactual properties. It incorporates losses for validity, sparsity, and proximity, alongside the novel soft-DTW-based plausibility component. We conduct an evaluation of our method against several strong reference approaches, measuring the key properties of the generated counterfactuals across multiple dimensions. The results demonstrate that our method achieves competitive performance in validity while significantly outperforming existing approaches in distributional alignment with the target class, indicating superior temporal realism. Furthermore, a qualitative analysis highlights the critical limitations of existing methods in preserving realistic temporal structure. This work shows that the proposed method consistently generates counterfactual explanations for time series classifiers that are not only valid but also highly plausible and consistent with temporal patterns.

Decision-making with deep learning-based time series forecasting requires not only accurate predictions but also actionable insights. However, current architectures do not inherently provide such information. Specifically, guidance is needed on how current conditions must be modified to shift from a predicted outcome to a desired future scenario. Counterfactual explanations provide a natural framework for this task, as they represent minimal input changes that alter the model's prediction, indicating when and how intervention is required. Existing approaches rely on instance-wise optimization, leading to inconsistency across instances, high computational costs, and limited applicability in real-time settings. To address these limitations, we reformulate counterfactual generation for time series forecasting as the problem of learning a globally consistent intervention strategy, allowing counterfactuals to be generated through a single shared function. We propose Counterfactual Time Series Explanations (ConTex), a model-agnostic, decomposed architecture comprising a temporal context encoder and a conditional encoder, followed by two heads that capture interventions in terms of temporal relevance and modification strength. This structure overcomes the instability and inconsistency of instance-based approaches by producing targeted, interpretable interventions across time and feature dimensions in a single forward pass, making it suitable for real-time applications. Across multiple forecasting architectures and benchmark datasets, ConTex achieves state-of-the-art validity while generating sparse counterfactuals that minimize the number of necessary interventions. Additionally, our approach reduces computational cost by at least 12-36x compared to instance-wise generation and supports real-time inference at approximately 0.007 seconds.