NeuroBRIDGE: Behavior-Conditioned Koopman Dynamics with Riemannian Alignment for Early Substance Use Initiation Prediction from Longitudinal Functional Connectome

Functional connectome analysis examines brain-region interactions to understand and identify disorders such as autism spectrum disorder and Alzheimer's disease. Existing methods typically use GNNs and Transformers to model the full functional connectivity matrix. However, processing tens of thousands of connections introduces redundancy and noise, increases computational cost, and limits connection-level interpretability. This raises a central question: do we really need complex interaction modeling, or is identifying a small set of disease-relevant connectivity patterns sufficient? To answer this question, we propose BrainLinear, a lightweight geometry-aware framework for mining disease-discriminative connectome patterns. BrainLinear first maps each functional connectivity matrix to a shared tangent space centered at the Fréchet mean of the training set, capturing subject-specific deviations while respecting matrix geometry. It then scores each ROI-pair tangent direction by its classification contribution and disease--control difference, retaining Top-$K$ directions as a compact representation. Finally, a shallow multilayer perceptron performs classification on the selected representation. Experiments on ABIDE and ADNI show that BrainLinear matches or exceeds strong GNN and Transformer baselines at a fraction of their cost: it improves AUC and ACC over the best baseline for each metric by up to $3.54$ and $1.39$ percentage points, while reducing runtime and peak GPU memory by $84.0\%$ and $68.4\%$ relative to the closest baseline in AUC. The selected directions are directionally consistent with between-group displacements and organized across major functional systems, supporting connection-level interpretation.

Adolescent pornography addiction requires early detection based on objective neurobiological biomarkers because self-report is prone to subjective bias due to social stigma. Conventional machine learning has not been able to model dynamic functional connectivity of the brain that fluctuates temporally during addictive stimulus exposure. This study proposes a state-of-the-art Dynamic Spatio-Temporal Graph Neural Network (DST-GNN) that integrates Phase Lag Index (PLI)-based Graph Attention Network (GAT) for spatial modeling and Bidirectional Gated Recurrent Unit (BiGRU) for temporal dynamics. The dataset consists of 14 adolescents (7 addicted, 7 healthy) with 19-channel EEG across 9 experimental conditions. Leave-One-Subject-Out Cross Validation (LOSO-CV) evaluation shows F1-Score of 71.00%$\pm$12.10% and recall of 85.71%, a 104% improvement compared to baseline. Ablation study confirms temporal contribution of 21% and PLI graph construction of 57%. Frontal-central regions (Fz, Cz, C3, C4) are identified as dominant biomarkers with Beta contribution of 58.9% and Hjorth of 31.2%, while Cz-T7 connectivity is consistent as a trait-level biomarker for objective screening.

Brain networks characterize structural and functional relationships among brain regions and support research on cognition, brain disorders, and brain-computer interfaces. Their time-varying topology and higher-order spatiotemporal dependencies are not adequately represented by conventional static networks. Existing tools primarily focus on static connectomes and provide limited integration of dynamic network modeling with modern graph and sequence learning methods. We present BrainNet Studio, an integrated toolkit for static and dynamic brain network analysis. It provides a unified workflow encompassing network construction, feature extraction, predictive modeling, candidate biomarker identification, visualization, and assisted interpretation. The toolkit integrates 27 algorithms, including deep learning, graph neural networks, and spatiotemporal sequence models, to support classification and the identification of discriminative brain regions and connections. A large language model generates researcher-verifiable summaries of functional connectivity, structural connectivity, and structure-function coupling at individual and group levels. Within a consistent computational framework, users can configure analytical tasks, compare methods, inspect outputs, and extend functionality without repeatedly assembling application-specific pipelines. BrainNet Studio provides a practical and extensible platform for connectome analysis in cognitive neuroscience, exploratory studies of brain disorders, and brain-computer interfaces. The toolkit is publicly available at https://github.com/xbrainnet/Brainnet-Studio.