Unsupervised Neural Network for Automated Classification of Surgical Urgency Levels in Medical Transcriptions

Clinical domain classification plays an important role in organizing and analyzing large volumes of unstructured medical text. However, medical transcription datasets are often highly imbalanced, which can substantially degrade classification performance, particularly for underrepresented clinical specialties. In this work, we present a comparative study of machine learning and transformer-based approaches for clinical domain classification from medical transcriptions. We evaluate six traditional machine learning classifiers---Naive Bayes, Support Vector Machine (SVM), Decision Tree, Random Forest, K-Nearest Neighbors (KNN), and XGBoost---along with two pretrained transformer models, BERT and XLNet, and a few-shot large language model prompting approach. Experiments are conducted on medical transcription data collected from MTSamples, comprising 5,013 samples across 40 clinical specialties. To address severe class imbalance, we investigate two balancing strategies: text augmentation using NLP-based synonym replacement and Synthetic Minority Over-sampling Technique (SMOTE). Experimental results demonstrate that data balancing substantially improves classification performance across the evaluated models. In particular, BERT achieves the highest F1-score of 0.996 on the SMOTE-balanced dataset while requiring lower training time than XLNet. The results highlight the effectiveness of transformer-based representations combined with appropriate data balancing strategies for clinical domain classification and provide a systematic comparison of classical machine learning, transformer models, and few-shot prompting for medical transcription analysis.

Automated classification of clinical transcriptions into medical specialties is essential for routing, coding, and clinical decision support, yet prior work on the widely used MTSamples benchmark suffers from severe data leakage caused by applying SMOTE oversampling before train test splitting. We first document this methodological flaw and establish a leakage free benchmark across 40 medical specialties (4966 records), revealing that the true task difficulty is substantially higher than previously reported. We then introduce CLiGNet (Clinical Label Interaction Graph Network), a neural architecture that combines a Bio ClinicalBERT text encoder with a two layer Graph Convolutional Network operating on a specialty label graph constructed from semantic similarity and ICD 10 chapter priors. Per label attention gates fuse document and label graph representations, trained with focal binary cross entropy loss to handle extreme class imbalance (181 to 1 ratio). Across seven baselines ranging from TF IDF classifiers to Clinical Longformer, CLiGNet without calibration achieves the highest macro F1 of 0.279, with an ablation study confirming that the GCN label graph provides the single largest component gain (increase of 0.066 macro F1). Adding per label Platt scaling calibration yields an expected calibration error of 0.007, demonstrating a principled trade off between ranking performance and probability reliability. We provide comprehensive failure analysis covering pairwise specialty confusions, rare class behaviour, document length effects, and token level Integrated Gradients attribution, offering actionable insights for clinical NLP system deployment.

Understanding surgical workflow in real time is fundamental for intelligent surgical embodiment, where AI systems continuously perceive and respond as surgery proceeds. In the operating room, critical decisions depend on subtle, moment-to-moment changes, such as fine instrument movements and evolving tissue states, where even slight perceptual delays can limit assistance or compromise safety. Yet existing methods remain offline or operate at coarse temporal scales, generating descriptions only after processing clips, preventing immediate reaction. We address this by proposing SurgOnAir, a streaming vision-language model that processes frames sequentially without future access and progressively generates narration tokens as visual input arrives. SurgOnAir achieves fine-grained frame-to-token generation, enabling instant responsiveness to evolving surgical dynamics. Built upon our curated hierarchical dataset SurgOnAir-11k spanning action-, step-, and phase-level supervision, the model is trained to produce multi-level textual responses that reflect the inherent hierarchy of surgical procedures. Furthermore, special transition tokens are generated to explicitly mark state changes, allowing SurgOnAir to capture and signal key workflow transitions as they occur. Experiments show that SurgOnAir enables real-time understanding through a single vision-language model that unifies streaming across multiple hierarchies of the surgical workflow, generating superior and hierarchy-aware narrations. The project is publicly available at https://github.com/KarolineZhy/SurgOnAir.