Towards Automated Ontology Generation from Unstructured Text: A Multi-Agent LLM Approach

This paper presents a hybrid architecture for intelligent systems in which large language models (LLMs) are extended with an external ontological memory layer. Instead of relying solely on parametric knowledge and vector-based retrieval (RAG), the proposed approach constructs and maintains a structured knowledge graph using RDF/OWL representations, enabling persistent, verifiable, and semantically grounded reasoning. The core contribution is an automated pipeline for ontology construction from heterogeneous data sources, including documents, APIs, and dialogue logs. The system performs entity recognition, relation extraction, normalization, and triple generation, followed by validation using SHACL and OWL constraints, and continuous graph updates. During inference, LLMs operate over a combined context that integrates vector-based retrieval with graph-based reasoning and external tool interaction. Experimental observations on planning tasks, including the Tower of Hanoi benchmark, indicate that ontology augmentation improves performance in multi-step reasoning scenarios compared to baseline LLM systems. In addition, the ontology layer enables formal validation of generated outputs, transforming the system into a generation-verification-correction pipeline. The proposed architecture addresses key limitations of current LLM-based systems, including lack of long-term memory, weak structural understanding, and limited reasoning capabilities. It provides a foundation for building agent-based systems, robotics applications, and enterprise AI solutions that require persistent knowledge, explainability, and reliable decision-making.

Ontology matching (OM) enables semantic interoperability between different ontologies and resolves their conceptual heterogeneity by aligning related entities. OM systems currently have two prevailing design paradigms: conventional knowledge-based expert systems and newer machine learning-based predictive systems. While large language models (LLMs) and LLM agents have revolutionised data engineering and have been applied creatively in many domains, their potential for OM remains underexplored. This study introduces a novel agent-powered LLM-based design paradigm for OM systems. With consideration of several specific challenges in leveraging LLM agents for OM, we propose a generic framework, namely Agent-OM (Agent for Ontology Matching), consisting of two Siamese agents for retrieval and matching, with a set of OM tools. Our framework is implemented in a proof-of-concept system. Evaluations of three Ontology Alignment Evaluation Initiative (OAEI) tracks over state-of-the-art OM systems show that our system can achieve results very close to the long-standing best performance on simple OM tasks and can significantly improve the performance on complex and few-shot OM tasks.

Ontology generation from Competency Questions (CQs) is a central yet labor-intensive phase of Ontology Engineering. While large language models (LLMs) offer promising automation capabilities, current evaluations remain fragmented. Task formulations are heterogeneous, gold standards often lack fine-grained CQ provenance, metrics conflate lexical overlap with structural and logical adequacy, and reference ontologies are not always explicitly designed around the evaluation CQs. Here, we address these limitations with CQ4OE, a benchmark for the systematic and reproducible evaluation of LLM-based ontology generation from CQs. For each ontology in the benchmark, we build a CQ-driven gold OWL ontology with explicit provenance linking each CQ to the classes, properties, and axioms required to answer it. From this resource, we define two complementary evaluation tasks. CQ2Term supports term-level evaluation of CQ-specific class and property prediction over 99 CQs, and CQ2Onto supports ontology-level evaluation over 118 CQs, including hierarchy, property modeling, and axiom-level structure. We demonstrate CQ4OE with experiments using nine LLMs under zero-shot, iterative, and multi-agent generation strategies, showing that LLMs recover explicit vocabulary terms more reliably than creating ontologies, particularly in property modeling, hierarchy construction, and axiom generation.