Accurate early warning of vineyard disease risk from environmental observations is essential for timely intervention and more sustainable crop protection. However, many existing studies formulate disease prediction as daily presence classification, which can favor persistence-driven predictions and provide only limited support for actionable short-horizon warning. In this paper, we present an event-based approach for early warning of vineyard disease risk from environmental time series and evaluate it through a vineyard case study. Rather than predicting daily disease status, the task is reformulated to predict transitions into annotated disease-risk periods within a future window of 3-7 days. To reduce fragmentation caused by short interruptions in the binary labels, new events are defined only after a minimum disease-free gap. This formulation encourages models to capture environmental precursors associated with upcoming risk periods instead of merely reproducing temporal persistence. Using multi-year agro-meteorological data, we construct input representations that capture humidity dynamics, rainfall accumulation, temperature variability, and seasonal structure through cyclic temporal encoding. We evaluate representative methods from classical machine learning and deep learning, including XGBoost, Long Short-Term Memory (LSTM) networks, and Temporal Convolutional Networks (TCNs), using both standard classification metrics and an event-oriented early warning protocol. The results show that the event-based formulation supports practical short-horizon warning, while the compared models exhibit distinct trade-offs between event recall, lead time, and false-alert behavior. Overall, the study underscores the importance of problem formulation in environmental time-series learning and demonstrates the value of event-based prediction for vineyard disease warning systems.
Accurate prediction of grape phenology is essential for timely vineyard management decisions, such as scheduling irrigation and fertilization, to maximize crop yield and quality. While traditional biophysical models calibrated on historical field data can be used for season-long predictions, they lack the precision required for fine-grained vineyard management. Deep learning methods are a compelling alternative but their performance is hindered by sparse phenology datasets, particularly at the cultivar level. We propose a hybrid modeling approach that combines multi-task learning with a recurrent neural network to parameterize a differentiable biophysical model. By using multi-task learning to predict the parameters of the biophysical model, our approach enables shared learning across cultivars while preserving biological structure, thereby improving the robustness and accuracy of predictions. Empirical evaluation using real-world and synthetic datasets demonstrates that our method significantly outperforms both conventional biophysical models and baseline deep learning approaches in predicting phenological stages, as well as other crop state variables such as cold-hardiness and wheat yield.
We present a real-world case study of multi-task learning (MTL) for temporal process modeling from limited data with temporally sparse labels. Specifically, we investigate multi-task learning for the important agricultural problem of predicting grape cold hardiness, which is the temperature at which lethal freezing occurs. Cold hardiness changes in response to weather and is difficult to measure directly in the field. Thus, growers rely on predictions to decide when to apply costly frost mitigation measures. We apply recurrent neural networks (RNNs) for daily cold-hardiness prediction from time series weather data. A major challenge is that the cold hardiness response varies across plant cultivars and ground-truth data for each cultivar is temporally sparse and limited. To address this challenge, we investigate multi-task learning (MTL) approaches for combining data, where different tasks correspond to different cultivars. We develop a variety of MTL architectures and evaluate them in both MTL and transfer learning settings. Our results show significant differences between architectures and that certain architectures are able to consistently outperform single-task learning and state-of-the-art scientific models. Additionally, we show similar results for the qualitatively different, but related, task of budbreak prediction. Further, improved accuracy for budbreak and cold hardiness is achieved by a single MTL model that simultaneously learns both tasks.
Aseem Saxena, Paola Pesántez-Cabrera, Markus Keller +1
Plant disease diagnosis is critical for food security, yet training disease-recognition models that generalize across crops, pathogens, and field conditions remains challenging because labeled disease images are far less abundant and standardized than data for other biotic stresses such as insects or weeds. Frontier vision-language models offer new opportunities through improved visual reasoning, but they still struggle with fine-grained disease identification due to the lack of structured, crop-specific symptom knowledge. To address this gap, we curate the largest plant disease image--symptom dataset to date, covering 335 crops, 1{,}251 disease classes, and approximately 839K images, designed to support training-free, agentic disease prediction. A scalable automated pipeline generates source-grounded symptom descriptions in which each claim is linked to a verbatim web quote; domain experts validate sampled crops and reconcile disease-name variants across sources. As a baseline, we introduce an autonomous visual reasoning agent that identifies anatomical context, narrows candidate diseases using symptom knowledge, sequentially compares reference images, and produces a fully explainable reasoning trace. Incorporating symptom knowledge improves accuracy by 16.2 percentage points on average at the full reference budget, with consistent gains across all four evaluation crops. Because the framework only requires crop-specific reference images and symptom knowledge, it can be extended to new crops without retraining, while the agentic baseline can directly benefit from future improvements in foundation model capabilities. Dataset and code are available at:https://sage-dataset.github.io/.