Free Energy Manifold: Score-Based Inference for Hybrid Bayesian Networks

Amortized inference promises fast test-time Bayesian inference, but existing methods are inherently tied to fixed models. Extending amortization to unseen models typically requires retraining or costly test-time finetuning. In this paper, we ask: is it possible to build a single inference network capable of generalizing across varying priors, likelihoods, and dimensionality? We introduce Amortized Factor Inference Networks (AFINs), a family of encode-merge-decode inference networks built on dimension-independent modules that map a model specification and its observations to the parameters of a variational posterior. Experimentally, a single trained AFIN achieves posterior accuracy comparable to NUTS and several variational inference methods, while requiring 2 to 4 orders of magnitude less test-time compute. Code is available at https://github.com/joohwanko/AFINs.

Bayesian neural networks are typically trained against the evidence lower bound (ELBO), whose Jensen gap closes only when the variational posterior is exact. We instead train by local consistency: gradient descent on the Bethe free energy, driving the belief at every factor toward agreement with its neighbours rather than placing a loss on the output. The resulting objective scores each observation by its own predictive density: a strictly proper rule whose optimum is the true conditional, for any likelihood with a tractable predictive convolution. Instantiated with a Gaussian last layer over a deterministic backbone, exact inference appears as one known corner: the neural-linear marginal likelihood. That corner is evidence-optimal; the shared-cavity, free-routed interior is predictive-optimal, improving NLL and calibration over it. This instance, SCROLL (Shared-Cavity fRee-rOuting Last-Layer), is a single-pass Bayesian neural network: batchable, any-likelihood, and implicitly empirical-Bayes-prior precision, observation noise, covariance, and backbone fit in one gradient pass. Prior work enters the interior only through the ELBO and its Jensen gap, even in this conjugate setting. At a single training run and forward pass per architecture-where the validation-tuned conventional references cross-validate $λ$ and ensembles pay $5$-$50\times$ at inference-a fixed SCROLL variant is best-or-tied on NLL and calibration on 7/8 UCI regression benchmarks, and best on 4/5 across three large tabular datasets (up to 515k examples) and two frozen text/vision embeddings.

Density estimation is a central primitive in probabilistic modeling, yet continuous, discrete, and mixed-variable domains are often treated by separate objectives, limiting the ability to exploit a common statistical structure across data types. Continuous score-based methods rely on log-density gradients, while discrete extensions typically use concrete score whose unbounded targets become unstable near low-probability states. We introduce Constant-Target Energy Matching (CTEM), a unified energy-based framework for density estimation on general state spaces. CTEM replaces ordinary density-ratio regression with a bounded energy-difference transform and derives from it a sample-only training objective with the constant target 1. The learned scalar potential recovers log p without partition-function estimation or explicit unbounded ratio regression. Across continuous, discrete, and mixed-variable benchmarks, CTEM substantially improves density estimation over competitive baselines and yields higher-quality samples under standard sampling procedures.