PlantPose: Universal Plant Skeleton Estimation via Tree-constrained Graph Generation

Autoregressive rigging models such as UniRig and SkinTokens perform well on articulated characters, but their ability to generalize to plant structures remains largely unexplored, since plant topologies exhibit highly variable, non-canonical branching patterns that challenge learned skeletal priors. We evaluate these models for plant skeletal reconstruction using synthetic L-system-generated trees and real scanned data spanning monopodial, sympodial, whorled, and vine-like archetypes. Preliminary testing showed UniRig collapsing complex branching into near-linear chains, while SkinTokens preserved topology better but over-segmented branches and produced an unstable output space, so we focused on UniRig for its greater stability. Diagnosis traced the collapse to sampling-level suppression of branch tokens, and further analysis showed the frozen mesh encoder had limited sensitivity to structural variation, pointing to a geometric bottleneck in the tokenization pipeline rather than a purely learned bias. Building on these findings, we applied multi-round fine-tuning over multiple procedurally generated synthetic datasets. Across rounds, the model progressively recovered accurate branching topology and generalized beyond branch-only structures to plants with foliage, a harder case given the zero-thickness, mesh-normal-dependent geometry of leaves. The resulting model generalized well across diverse plant forms without leaf-specific architectural changes, indicating that targeted fine-tuning can substantially close the domain gap between character-rigging priors and plant skeletal structure. As such, our work points toward a viable path for automated plant rigging across both branch topology and foliage type, even those not considered in our findings.

Accurate 3D plant organ segmentation is fundamental to automated phenotyping. Existing approaches rely on annotated training data or species-specific model configurations. We present an annotation-free pipeline for 3D plant organ segmentation, combining text-prompted SAM3 segmentation with semantic neural radiance fields (NeRFs). Given only multi-view RGB images and a list of class names, our zero-shot pipeline produces semantically labeled 3D point clouds without manual annotation, per-species fine-tuning, or domain-specific preprocessing. Multi-view NeRF fusion acts as effective implicit consensus mechanism that lifts imperfect per-frame masks into accurate 3D labels. On a controlled Begonia maculata testbed the SAM3 pipeline achieves 92.6% mIoU, reaching 95.9% of the oracle upper bound established with perfect ground-truth masks. The pipeline was further evaluated on a new dataset spanning ten diverse plant point clouds reaching an average 0.856 mIoU, with leaf and pot IoU above 0.91 and 0.90 for every species, respectively. These results demonstrate that annotation-free 3D plant organ segmentation is now feasible and approaching the range of supervised methods.

Accurate plant growth estimation is essential for greenhouse monitoring, yet obtaining labeled data remains costly and time-consuming. To address this, we propose a few-shot regression framework that combines Vision Transformer (ViT) feature embeddings, clustering-based task construction, and gradient-based meta-learning, and show that task construction in embedding space is a primary driver of performance. The approach leverages an unlabeled image pool to organize data into structured tasks using fuzzy c-means clustering, enabling efficient learning from a small number of labeled samples. We systematically evaluate meta-learning methods and show that second-order methods (e.g., Model-Agnostic Meta-Learning variants such as MAML++) outperform classical baselines in the few-shot regime. Furthermore, intra-cluster support selection has a limited and dataset-dependent impact. Experiments on two plant datasets show that structured task design combined with meta-learning enables reliable plant growth estimation under severe label scarcity.