Zero-Shot 3D Plant Organ Segmentation with SAM3 and Semantic NeRFs

Open-vocabulary segmentation models such as SAM3 perform well across broad categories via text prompting, yet degrade when target classes are visually underrepresented in pretraining or depart from canonical depictions-limitations text prompts cannot resolve spatially. We present SegRAG, a training-free retrieval-augmented segmentation framework that grounds SAM3 with class-specific point prompts derived from a curated DINOv3 feature bank. Offline, dense patch-level descriptors are extracted from annotated references and filtered by Intra-Class Cohesion Distillation (ICCD), retaining only prototypes that reliably retrieve within-class foreground. At inference, Topographic Similarity Grounding (TSG) computes a cosine-similarity landscape against retrieved prototypes, identifies coherent high-confidence regions via connected-component analysis, and extracts peak locations through non-maximum suppression. The resulting point prompts are delivered jointly with class-name text in a single SAM3 forward pass. On four standard benchmarks, SegRAG consistently outperforms the text-only baseline, gaining up to +3.92 mIoU on LVIS. On AgML agricultural benchmarks under zero-shot domain transfer, it raises mean IoU from 25.27 to 59.24 (+33.97) and recovers individual classes from zero to over 95 mIoU. Ablations confirm that ICCD, TSG, and joint prompting each contribute independently and compound when combined. Code is available at (https://github.com/boudiafA/SegRAG).

Automated instance segmentation of forest LiDAR point clouds is increasingly critical as forest monitoring moves toward scalable, detailed, 3D measurement. Yet, progress is constrained by label scarcity for tree instances; a single hectare can hold millions of points and hundreds of overlapping, complex crowns, making manual annotation from scratch with raw data laborious and error-prone. Annotations are often corrected from automatic pre-segmentations, but remain costly as these provide no interactive or AI-assisted refinement. Inspired by the promptable paradigm of foundation segmentation models, we propose SelectAnyTree, a promptable instance segmentation model that delineates any individual tree in a 3D forest point cloud from a few clicks. It introduces two key components: Click-to-query prompt encoder and Canopy Height Model (CHM)-guided first prompt. The former turns each click into a single content query, encoding its 3D position and positive/negative polarity together with a pooled local backbone feature. The latter provides treetops as a geometry- and ecologically guided first prompt without any user input. The resulting prompt query is then decoded into one tree mask by a state-space query decoder to efficiently capture long-range context in large-scale forest scenes with linear-time complexity. We evaluate SelectAnyTree in interactive and instance-level settings across seven diverse forest regions and an independent held-out test dataset, demonstrating strong generalization beyond the training domains. It segments a target tree to 78.2 Intersection over Union (IoU) from a single click, 24.8 points above the strongest promptable baseline, and reaches every accuracy target with the fewest clicks, while using far fewer parameters and less inference time than prior promptable models. The source code is available at https://github.com/thanhhff/SelectAnyTree.

3D semantic scene understanding is essential for digital twins, autonomous driving, smart agriculture, and embodied perception, yet dense point-wise annotation for point clouds remains expensive and difficult to scale. Existing annotation-free methods often face a trade-off between semantic recognition and structural efficiency: open-vocabulary and foundation-model-driven methods provide strong semantic priors, but often come with substantial computational costs, while structure-oriented methods based on superpoints, clustering, and graph reasoning are lightweight but often produce category-agnostic regions. We propose DDS, a resource-efficient structure-oriented framework for region-consistent and semanticized annotation-free 3D scene understanding. DDS preserves the lightweight superpoint-based organization paradigm while incorporating visual semantic cues from projected features and segmentation-derived masks. It first performs multi-granularity distillation to guide the 3D backbone at the point, mask-prototype, and inter-prototype levels, then applies graph diffusion over superpoints to propagate semantic information directly in 3D, producing coherent region representations without costly spectral decomposition or dense open-vocabulary 3D feature fields. Finally, DDS uses segmentation-cluster association to assign interpretable semantic names to category-agnostic 3D clusters. Experiments on real-world datasets show that DDS achieves the best performance among representative structure-oriented annotation-free baselines, improving oAcc, mAcc, and mIoU by up to 5.9%, 8.1%, and 2.4%, respectively. These results demonstrate that DDS improves region consistency and lightweight semantic recognition, providing a scalable and interpretable solution for annotation-free 3D scene understanding.