Corrected Integrated Laplace Approximation for Bayesian Inference in Latent Gaussian Models
Authors: Jinlin Lai, Charles C. Margossian, Daniel R. Sheldon
Organizations: Manning College of Information and Computer Sciences University of Massachusetts Amherst · Department of Statistics University of British Columbia
Latent Gaussian models (LGMs) are a popular class of Bayesian hierarchical models that include Gaussian processes, as well as certain spatial models and mixed-effect models. Efficient Bayesian inference of LGMs often requires marginalizing out the latent variables. For LGMs with a non-Gaussian likelihood, exact marginalization is not possible and a popular approach is to do approximate marginalization with an integrated Laplace approximation (ILA). Using ILA produces an approximate posterior which, in some settings, can differ significantly from the correct posterior, which impacts downstream applications. We propose an importance sampling scheme to correct the error introduced by ILA. By increasing the number of samples in importance sampling, the posterior with ILA converges to the correct posterior. This idea is realized with various techniques, including pseudo-marginalization, quasi-Monte Carlo and randomized quasi-Monte Carlo. We implement our methods in an automatic differentiation framework to support gradient-based algorithms when doing inference on the hyperparameters. For the latter, we specifically consider the use of Hamiltonian Monte Carlo. We demonstrate the benefits of reduced error in various applied models.
Hamiltonian Monte Carlo (HMC) is a successful generic inference method in probabilistic programming, but in its ordinary formulation it needs gradients and finite-dimensional parameter spaces. In Haskell, lazy evaluation lets probabilistic programs express stochastic processes and other non-parametric Bayesian models over implicit infinite-dimensional spaces. This paper develops new formulations of gradient-based HMC for this infinite-dimensional setting, via lazy evaluation. For automatic differentiation, we provide an analysis based on a new notion of "piecewise analytic under cylindrical analytic partition" (PACAP), to show that even if a program is infinite-dimensional and defined lazily, the gradient of the likelihood function is finitely supported. For the Monte Carlo method itself, we develop several HMC variants and a No-U-Turn Sampler that operate over the infinite-dimensional parameter space but are still productive because of lazy evaluation. Experiments cover Gaussian mixture clustering, random walks, and piecewise-constant regression with Poisson-process changepoints.
Maria-Nicoleta Crăciun, C. -H. Luke Ong, Tom Schrijvers +1
We develop interacting particle algorithms for learning latent variable models with energy-based priors. To do so, we leverage recent developments in particle-based methods for solving maximum marginal likelihood estimation (MMLE) problems. Specifically, we provide a continuous-time framework for learning latent energy-based models, by defining stochastic differential equations (SDEs) that provably solve the MMLE problem. We obtain a practical algorithm as a discretisation of these SDEs and provide theoretical guarantees for the convergence of the proposed algorithm. Finally, we empirically validate the effectiveness of our method on synthetic and image datasets and demonstrate that using a particle based approach offers significant improvement in computational efficiency.
Diffusion models have excellent capacity to model complex distributions of natural data, which has made them a popular and effective choice for posterior sampling in imaging inverse problems. Existing methods can incorporate any measurement model at inference time but must use an inexact approximation for the likelihood at intermediate timesteps for computational tractability. Although these approximations can often work well empirically, their downstream effect on the sampled posterior is poorly understood and can result in unexplained failures. To understand when, why, and how these likelihood approximations propagate to erroneous posterior distributions, we introduce a finite-sample perspective on posterior sampling that approximates the posterior to arbitrary precision as training set size tends towards infinity, for any forward model and prior distribution. Using this finite-sample lens, we observe that popular posterior sampling approximations tend to under- or over-estimate the spread of the posterior at intermediate timesteps, causing downstream consequences including sensitivity to early stopping time, inaccurate relative weighting of posterior modes, and hallucination, both of prior modes that are not in the posterior and likelihood modes that are not supported by the prior. Moreover, we find that the cause of these posterior errors requires neither a nonlinear measurement model nor a multimodal posterior, but can arise solely due to a multimodal prior and inaccurate posterior spread at intermediate sampling times. Our finite-sample posterior sampling approach is agnostic to the type of likelihood approximation and the type of (linear or nonlinear) forward model, and can thus serve as a drop-in diagnostic to evaluate the accuracy and failure modes of existing and future posterior samplers.