SAM-Sode: Towards Faithful Explanations for Tiny Bacteria Detection

Despite the rapid uptake of black-box object detectors in marine mammal research and monitoring, explainability techniques are rarely integrated into conservation workflows. Furthermore, most classification-oriented explainability tools are ill-suited to detection tasks involving imagery of social organisms or those with colonial life histories, as they ignore multiple detections within a scene and produce single-instance outputs that blur evidence across individuals. These methods also generate low-resolution, often biologically irrelevant visuals, limiting their utility for debugging, targeted data augmentation, and refined data collection. We proposed Det-LIME, a detector-aware, multi-instance adaptation of Local Interpretable Model-Agnostic Explanations (LIME) that produced instance-specific, box-aligned explanations by combining per-detection weighting, a proximity kernel that emphasizes regions near each box, and Intersection-over-Union-based matching to track the same instance across perturbations. We evaluated Det-LIME on aerial drone imagery for harbor seal detection, with an additional seabird case study to assess generality, and compared it with vanilla LIME, Stabilized LIME, Deterministic LIME, and gradient-based attribution methods. Using the Attribution Ratio and Max Saliency Hit Rate metrics, we showed that Det-LIME consistently improved multi-instance attribution. In practice, these higher-resolution, instance-aware explanations provide insight into model outputs and support post-processing, debugging, and actionable improvements in modeling and data collection or augmentation.

Visual explainability for object detection remains challenging due to the multi-instance nature of detection. Existing approaches predominantly adopt post-hoc paradigms, such as gradient-based or perturbation-based explanation methods, to interpret pretrained detectors. However, these methods require additional gradient computation or repeated model inference, resulting in limited efficiency. To address this issue, we propose an End-to-end Instance-specific Visual Explanation framework (EIVE) that directly generates instance-level saliency maps following the forward pass of Detection Transformer (DETR)-like models. Specifically, we reformulate the cross-attention mechanism in the decoder as an instance-level feature attribution pathway, so that the cross-attention of each object query corresponds to the visual attribution of its predicted instance. Based on this formulation, we design a cross-layer hybrid consensus fusion (CLHCF) module to aggregate cross-attention signals across decoder layers, producing stable and compact explanations. The explanation process of EIVE requires neither gradient computation nor input perturbation, yielding high computational efficiency, and applies to single- and multi-scale DETR-like object detectors. Finally, we present an attention-aware joint training strategy (AAJTS) as a training-oriented application, which imposes spatial constraints on cross-attention patterns to encourage stable and concentrated attribution representations, thereby improving both interpretability and detection performance. Experiments on MS COCO 2017, ExDark, and Cityscapes demonstrate that EIVE produces high-quality instance-level saliency maps and achieves performance comparable to, or better than, state-of-the-art post-hoc methods across standard metrics, while substantially improving explanation efficiency. Code is available at https://github.com/xjlDestiny/EIVE.git.

The growing demand for transparency in automated decision-making has propelled eXplainable Artificial Intelligence (XAI) to the forefront of machine learning research. In computer vision, however, existing explanation methods often prioritize end-user accessibility at the expense of formal guarantees, leaving a critical gap between practical utility and theoretical rigor. In this paper, we address this gap by introducing OPTIMUS, a novel framework for generating concept-based visual explanations for deep classification models. OPTIMUS explanations take the form of visual heatmaps that not only remain interpretable to end users, but are grounded in the well-established theory of prime implicants, providing formal guarantees that have been largely absent from existing saliency-based methods. Specifically, OPTIMUS explanations satisfy two desirable properties: sufficiency, ensuring that the highlighted concepts provably guarantee the classifier's prediction, and minimality, ensuring that no strict subset of those concepts retains this guarantee. Together, these properties yield explanations that are both logically tight and visually coherent. We validate our approach on a visual classification benchmark, demonstrating that OPTIMUS heatmaps naturally and faithfully surface the decision-relevant concepts underlying model predictions.