cs.CVMay 21, 2026

Robustness of breast lesion segmentation under MRI undersampling improves with k-space-aware deep learning

Authors: Lukas T. RotkopfMarco SchlimbachJulius C. HolzschuhHeinz-Peter SchlemmerJens KleesiekMoritz Rempe

Organizations: Institute for AI in Medicine (IKIM), University Hospital Essen, Essen, Germany · Department of Physics, Technical University Dortmund, Dortmund, Germany · 3Division of Radiology, German Cancer Research Center (DKFZ), Heidelberg, Germany · 4Cancer Research Center Cologne Essen (CCCE), University Medicine Essen, Essen, Germany · 5RACOON Study Group, Site Essen, Essen, Germany · 6German Cancer Consortium (DKTK), Partner Site Essen, Essen, Germany · 7Medical Faculty and Faculty of Computer Science, University of Duisburg-Essen, Essen, Germany

Abstract

Purpose: To assess whether breast lesion segmentation can be learned directly from acquired MRI k-space, and whether doing so improves robustness when data are accelerated or noisy. Materials and Methods: This retrospective study used public breast dynamic contrast-enhanced MRI (DCE-MRI) datasets with acquired and synthetic k-space, together with a within-dataset synthetic control. We compared four 3D U-Net variants: a hybrid k-space-to-image model, a native k-space model, and magnitude and complex image-space baselines. Models were evaluated under increasing undersampling and added complex Gaussian k-space noise. The primary outcome was patient-level Dice similarity coefficient under cross-validation, with the hybrid model prespecified as the main comparison against the magnitude image-space baseline. Results: At full sampling, the hybrid and image-space models performed similarly. As acceleration increased, the hybrid model retained substantially more segmentation accuracy and significantly outperformed the magnitude image-space baseline across moderate to high undersampling levels. The same pattern was observed when noise was added directly to k-space: the hybrid model degraded more slowly, whereas the image-space baseline failed under heavier noise. This advantage was reproduced in the within-dataset synthetic control. Feature analysis suggested that the k-space stage and image-space stage played complementary roles, with frequency-domain filtering concentrated before image-domain lesion localization. Conclusion: K-space-aware deep learning improves the robustness of breast lesion segmentation under MRI undersampling and k-space noise, while matching image-space methods at full sampling.

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