Pre-Training for Simulation-Based Science: A Study on Jet Foundation Model Training Objectives
Authors: Ibrahim Elsharkawy, Joschka Birk, Vinicius Mikuni, Wahid Bhimji, Gregor Kasieczka, Benjamin Nachman
Organizations: Department of Physics, University of Toronto and Vector Institute, Toronto, ON, Canada · NERSC, Lawrence Berkeley National Laboratory, Berkeley, California, USA · Institut für Experimentalphysik, Universität Hamburg, 22761 Hamburg, Germany · Nagoya University, Kobayashi-Maskawa Institute, Aichi 464-8602, Japan · Department of Particle Physics and Astrophysics, Stanford University, Stanford, CA 94305, USA · Fundamental Physics Directorate, SLAC National Accelerator Laboratory, Menlo Park, CA 94025, USA
Abstract
Foundation models (FMs) trained on large datasets and fine-tuned on downstream tasks have emerged as a powerful paradigm in AI for science. Industrial FMs are typically trained using self-supervision with masking due to the lack of labels. In many scientific domains, accurate simulations are plentiful and facilitate large, labeled datasets. This opens up new possibilities for pre-training. We present a systematic comparison of pre-training methods using the OmniLearned High Energy Physics FM framework. We test supervised classification, flow-matching generation, and self-supervised masked particle modeling. All models are pre-trained on the JetClass dataset and fine-tuned on two representative downstream tasks, top jet classification and JetNet conditional generation. Among other observations, for classification tasks, we find that pure classifier pre-training is optimal when downstream labels and model capacity are plentiful, but combining it with self-supervised masked particle modeling (MPM) is uniquely powerful in the low-finetuning label regime. Flow matching-based generative pre-training seems to provide little benefit for downstream classification, and interestingly, for downstream generation, we find that flow matching must be in the pre-training objective to see a significant finetuning advantage, hinting at the orthogonality of classification and generation tasks. That is, for a model to transfer to both generative and classification downstream tasks, it must be pre-trained on both. This study provides a template for controlled scaling analysis of pre-training objectives for foundation models in simulation-based sciences.
We present a lightweight approach to foundation modeling (\textbf{NEXUS}) that leverages pre-trained learning from collider physics data towards out-of-domain tasks in other scientific datasets, using a fully connected autoencoder model with approximately 3 million parameters. The model pre-trains with no supervision over a large-scale collision dataset from the Large Hadron Collider modeled by charged particle track features. Downstream tasks for collider analyses, such as kinematic regression and event classification, are developed on pre-trained model weights and achieve improved accuracy with only small labeled datasets when compared to equivalent architectures trained from scratch. The benefits of pre-training are additionally investigated through latent space interpretation and application to other domains, including gravitational waves, flood forecasting, and neural activity. Furthermore, the relative computational simplicity of NEXUS is demonstrated compared to transformer approaches at comparable scale, opening the door to power-efficient inference and real-time or edge applications of foundation models in scientific experiments.
Foundation models are increasingly being pursued in particle and nuclear physics, but existing approaches remain strongly tied to individual experiments through detector-specific architectures or pre-training objectives, limiting their reuse across sensing modalities. We show that a point cloud self-distillation framework yields a substantially more general sensor-level pre-training recipe. We show that the same refined architecture and objective can be independently pre-trained with minimal changes on three qualitatively different detector modalities: liquid argon time projection chamber (LArTPC), collider TPC, and water Cherenkov. Using 1,000 labeled images for downstream task adaptation, Panda V2 matches or exceeds specialized foundation-model baselines trained with orders of magnitude more supervision, matching state-of-the-art particle-clustering performance with 70x fewer labeled events on sPHENIX while substantially improving particle identification, and on LArTPC data matching Panda (arXiv:2512.01324) particle reconstruction with up to 1,000x fewer labels. Beyond reconstruction, simple linear probes reveal physically meaningful latent structure associated with particle causality and track curvature.
Neural scaling laws describe how model performance improves as a power law in compute, model size, and dataset size. While well-established for large language models, these relationships are emerging for large models in particle physics. As with language, empirical studies show that the performance scales as a power law. However, unlike natural language or image domains, fundamental physics has high-fidelity simulators that produce synthetic data cheaply. This favors scaling regimes where additional data is cheaper than additional parameters, and allows the pretraining dataset itself to be engineered to influence the scaling. For the task of classifying hadronic jets produced in collisions of high-energy particle beams, we show that the scaling behavior can be engineered towards requiring more data rather than larger models by inclusion of pretraining data which is more diverse and better aligned with the downstream classification task.