Pixel-Precise Explainable Stress Indexing: A Semantic Segmentation Framework for Disease Severity Quantification in Field Crops

Rising global food demand and growing climate pressure increase the need for sustainable, precise agricultural practices. Automated, individualized plant treatment relies on fine-grained visual analysis, yet leaf-level segmentation remains underexplored despite its value for assessing crop health, growth dynamics, yield potential and localized stress symptoms. Progress is limited by a lack of dedicated datasets, especially regarding species coverage, and by the absence of systematic evaluations of modern instance-segmentation architectures for this task. We address these gaps by surveying current data and identifying four suitable, publicly available leaf-segmentation datasets. Using them, we compare one-stage, two-stage and Transformer-based detectors and identify a YOLO26 model configuration to provide the best trade-off for real-world precision-agriculture tasks. Extensive cross-domain generalization experiments reveal substantial performance drops across plant species and recording setups, especially for models trained solely on laboratory data. To strengthen data availability, we introduce a new benchmark dataset with leaf-level masks for 23 plant species, created via semi-automatic annotation of selected CropAndWeed images. A model trained on all four existing datasets achieves a mean mAP50-95 of 83.9% across their corresponding test sets and 40.2% on our new benchmark, demonstrating improved generalization and highlighting the need for diverse leaf-segmentation datasets in robust precision agriculture.

Plant disease diagnosis is critical for food security, yet training disease-recognition models that generalize across crops, pathogens, and field conditions remains challenging because labeled disease images are far less abundant and standardized than data for other biotic stresses such as insects or weeds. Frontier vision-language models offer new opportunities through improved visual reasoning, but they still struggle with fine-grained disease identification due to the lack of structured, crop-specific symptom knowledge. To address this gap, we curate the largest plant disease image--symptom dataset to date, covering 335 crops, 1{,}251 disease classes, and approximately 839K images, designed to support training-free, agentic disease prediction. A scalable automated pipeline generates source-grounded symptom descriptions in which each claim is linked to a verbatim web quote; domain experts validate sampled crops and reconcile disease-name variants across sources. As a baseline, we introduce an autonomous visual reasoning agent that identifies anatomical context, narrows candidate diseases using symptom knowledge, sequentially compares reference images, and produces a fully explainable reasoning trace. Incorporating symptom knowledge improves accuracy by 16.2 percentage points on average at the full reference budget, with consistent gains across all four evaluation crops. Because the framework only requires crop-specific reference images and symptom knowledge, it can be extended to new crops without retraining, while the agentic baseline can directly benefit from future improvements in foundation model capabilities. Dataset and code are available at:https://sage-dataset.github.io/.

In this study, UAV multispectral imagery is used to segment the severity of bacterial leaf blight (BLB) in rice using convolutional neural networks (CNNs) and transformer-based models. The evaluated architectures include U-Net with a ResNet- 101 encoder, U-Net++ with EfficientNet-B3 and EfficientNetB7, DeepLabV3+, and SegFormer, all trained under a common pipeline with three input configurations (multispectral only, multispectral+NDVI, and multispectral+NDRE). Experiments are conducted using the publicly available BLB dataset with performance reported using mean IoU (mIoU), mean F1 (mF1), mean accuracy (mAcc), precision, and recall. U-Net++ with EfficientNet-B3 achieved the highest performance, with an mIoU of 97.62%. SegFormer obtained lower segmentation accuracy but comparable inference speed. Overall, the results indicate that lightweight CNN backbones remain more reliable for operational BLB monitoring while integration of vegetation indices provides small and consistent improvements. The study also highlights the value of standardised UAV datasets to compare disease mapping methods and encourages the use of CNN architectures for field implementation.