PUe: Biased Positive-Unlabeled Learning Enhancement by Causal Inference

We propose a new method of learning from positive and unlabeled (PU) examples in highly imbalanced datasets. Many real-world problems, such as disease gene identification, targeted marketing, fraud detection, and recommender systems, are hard to address with machine learning methods, due to limited labeled data. Often, training data comprises positive and unlabeled instances, the latter typically being dominated by negative, but including also several positive instances. While PU learning is well-studied, few methods address imbalanced settings or hard-to-detect positive examples that resemble negative ones. Our approach uses a focused empirical risk estimator, incorporating both positive and unlabeled examples to train binary classifiers. Empirical evaluations demonstrate state-of-the-art performance on imbalanced datasets under two labeling mechanisms - selecting positives completely at random (SCAR) and selecting at random (SAR). Beyond these controlled experiments, we demonstrate the value of the proposed method in the real-world application of financial misstatement detection.

Positive-unlabeled (PU) learning addresses binary classification when only a set of labeled positives is available alongside a pool of unlabeled samples drawn from a mixture of positives and negatives. Existing PU methods typically require dataset-specific training or iterative optimization, which limits their applicability when many tasks must be solved quickly or with little tuning. We introduce PUICL, a pretrained transformer that solves PU classification entirely through in-context learning. PUICL is pretrained on synthetic PU datasets generated from randomly instantiated structural causal models, exposing it to a wide range of feature-label relationships and class-prior configurations. At inference time, PUICL receives the labeled positives and the unlabeled samples as a single input and returns class probabilities for the unlabeled rows in one forward pass, with no gradient updates or per-task fitting. On 20 semi-synthetic PU benchmarks derived from the UCI Machine Learning Repository, OpenML, and scikit-learn, PUICL outperforms four standard PU learning baselines in average AUC and accuracy, and is competitive on F1-score. These results show that the in-context learning paradigm extends naturally beyond fully supervised tabular prediction to the semi-supervised PU setting.

Unlabeled-unlabeled (UU) learning allows us to learn a binary classifier from two sets of unlabeled data with different class-priors. It is a general framework because it includes a wide variety of supervised learning such as positive-unlabeled (PU) learning, noisy label learning, and similarity-based learning. Existing UU learning assumes that the test and training distributions have the same class-conditional densities. However, this assumption rarely holds in practice due to distribution shifts. This paper proposes a distribution shift adaptation method for UU learning that uses UU data in the training distribution and a few UU data in the test distribution. The proposed method is based on the importance weighting, which minimizes the test risk by using training data with estimated importance weights. Although existing importance weighting methods cannot handle UU data, we show that it can be done in a principled manner. Thanks to the generality of UU learning, our method can handle various learning problems such as PU and noisy label learning under distribution shift within a single framework while existing methods are usually tailored to a specific problem. Moreover, it does not require any assumption of the shift types such as covariate shift. We experimentally demonstrate the effectiveness of the proposed method with real-world datasets.