A Neighborhood Attention Transformer Network for Enhanced 3D Segmentation of the Left Anterior Descending Artery
Authors: Rafi Ibn Sultan, Chengyin Li, Yiannos Demetriou, Ahmed I. Ghanem, Joshua P. Kim, Justine Cunningham, Hassan Bagher-Ebadian, Dongxiao Zhu, +1 more
Organizations: Department of Computer Science, Wayne State University, Detroit, MI, 48202, USA · Department of Radiation Oncology, Henry Ford Health, Detroit, MI, 48202, USA · Department of Clinical Oncology, Alexandria University, Alexandria, 21526, Egypt · Department of Radiology, Michigan State University, E. Lansing, MI, 48824, USA · College of Osteopathic Medicine, Michigan State University, E. Lansing, MI, 48824, USA · Department of Physics, Oakland University, Rochester, MI, 48309, USA · Institute for AI and Data Science, Wayne State University, Detroit, MI, 48202, USA
Abstract
Background: Accurate segmentation of the Left Anterior Descending (LAD) artery in 3D free-breathing, non-contrast CT is critical for cardiac dose sparing in thoracic radiotherapy. The LAD is extremely small, has poor soft-tissue contrast, and varies substantially across patients; even manual contours show limited inter-observer agreement, underscoring the ambiguity of the vessel boundaries. Purpose: To develop a transformer-based framework that improves LAD delineation in low-contrast, imbalanced CT through local-global context modeling and uncertainty-guided optimization. Methods: We propose NA-UNETR, a 3D transformer-based segmentation model whose Neighborhood Attention (NA) and Dilated NA (DiNA) blocks jointly capture fine structural detail and long-range context. Given the scarcity of annotated LAD data, the model is pretrained on 1,000 CTA volumes of general coronary anatomy and fine-tuned with LoRA-based parameter-efficient adaptation on 20 free-breathing institutional CT scans. A composite Dice-Focal and Hausdorff loss, dynamically balanced via homoscedastic uncertainty, improves overlap and boundary accuracy. Results: NA-UNETR reached 45.64% Dice, 38.16 mm HD95, and 10.01 mm ASD, improving Dice by 3.10 percentage points over nnU-Net and reducing HD95 by 2.96 mm relative to Swin UNETR, with the strongest boundary accuracy among all models and improved centerline stability. On ImageCAS it achieved 79.49% Dice, 8.89 mm HD95, and 1.02 mm ASD. Ablations confirmed that residual blocks, variable kernels, and uncertainty-weighted loss each contributed. Conclusions: NA-UNETR balances local precision and global context for thin, low-contrast LAD structures, offering a computationally efficient framework for substructure-level cardiac segmentation in radiotherapy planning.
Dynamic contrast-enhanced cardiac CT enables time-resolved analysis of contrast filling and washout in the left atrium (LA) and left atrial appendage (LAA), with potential applications for assessing blood stasis in atrial fibrillation (AF). Accurate segmentation across all frames is required for such analysis but is challenging due to large temporal contrast variations and the use of a single annotation per registered sequence. This creates a trade-off between training for robustness and limiting label noise. In this study, we investigate how temporal training-set design affects nnUNet-based segmentation of the LA and LAA in dynamic 4DCT. We compare training using a minimal two-frame dataset reflecting standard clinical practice, a physiologically selected subset of frames, and the full 27-frame sequence. We further evaluate the impact of foreground-based normalization. Training with all frames yielded the best performance in early low-contrast phases. However, the physiologically selected subset achieved comparable performance from the filling phase onward. Applying normalization parameters derived from the full dataset improved performance of reduced datasets in low-contrast frames, but did not fully close the gap. These findings highlight the importance of temporal diversity in training data for robust segmentation in dynamic CT, while indicating that carefully selected frame subsets may provide an effective trade-off between performance and efficiency for downstream applications.
David Montalvo-García, Lauren Severance, Elliot R. McVeigh +1
Accurate coronary Digital Subtraction Angiography (DSA) vessel segmentation is essential for computer-aided diagnosis and treatment planning of coronary artery disease (CAD). However, thin low-contrast vessels, background interference, and severe vessel-background class imbalance make reliable segmentation of weak distal branches and vessel boundaries challenging. Existing methods struggle to balance global contextual reasoning with preservation of weak vessels, vessel continuity, and fine boundaries. To address these limitations, we propose HTC-SGA Former, a lightweight hybrid Transformer-CNN framework for coronary DSA vessel segmentation. It employs a CNN encoder for local vessel morphology extraction and a Transformer decoder for contextual feature modeling. A Multi-Scale Global-Local Window Attention (MS-GLWA) block performs efficient global-local contextual modeling, while a Self-Guided Feature Attention (SGFA) module enhances weak-vessel responses. In addition, a Boundary-Weighted Adaptive Compound Loss (BWACL) emphasizes thin-vessel boundaries and adaptively balances vessel recovery and boundary refinement. Experiments on private right and left coronary artery DSA subsets show that HTC-SGA Former outperforms 14 state-of-the-art segmentation methods while maintaining a compact architecture with only 0.81M parameters. BWACL also improves performance over binary cross-entropy and Dice losses across four encoder-decoder architectures, demonstrating strong cross-backbone applicability. HTC-SGA Former improves thin-vessel recovery, vessel continuity, and boundary localization through complementary global-local contextual modeling, vessel-focused refinement, and adaptive optimization, supporting reliable and computationally efficient coronary vessel analysis for future computer-assisted cardiovascular interventions.
Rayan Merghani Ahmed, Marwa Omer Mohammed Omer, Mohamed Elmanna +3
Four-dimensional computed tomography (4DCT) captures the full respiratory cycle of thoracic anatomy, yet current Internal Target Volume contouring workflows process each phase in isolation, discarding temporal coherence and leaving contours vulnerable to phase-specific artifacts. We present a lightweight framework that applies parameter-efficient fine-tuning to the Segment Anything Model 3 (SAM 3) via low-rank adaptation (LoRA) to align its text-prompted segmentation with the medical domain using only seven annotated 3D CT volumes. Furthermore, the framework incorporates a hard negative mining strategy to improve boundary discrimination in low-contrast thoracic regions. At inference, phase-wise predictions are refined through phase-coherent temporal filtering and spatial connectivity analysis. Since respiratory motion is continuous and periodic, genuine anatomy appears in contiguous blocks of phases, whereas transient artifacts appear sporadically and are thus effectively suppressed. Experiments on pulmonary and cardiac structures yield median Dice scores of 0.968 and 0.910 with 95th-percentile Hausdorff distances of 0.998 mm and 2.931 mm, respectively. The proposed framework effectively eliminates the severe false-positive predictions inherent in the zero-shot inference of the unadapted SAM 3. With only seven annotated volumes, the framework retains over 95% of full-data accuracy, and the entire pipeline is trainable on a single consumer-grade GPU, demonstrating a scalable, data-efficient solution for adaptive radiotherapy.