Generative data assimilation highlights fronts as key regulators of ocean energy cascade

Deep learning models for scientific spatio-temporal downscaling often minimize reconstruction error while failing to preserve physically meaningful multi-scale structure. For sea surface temperature prediction, this can yield outputs that are numerically plausible yet overly smooth, missing mesoscale variability critical to regional ocean dynamics. Existing methods often focus on pixel-wise objectives or single-context conditioning, which limits their ability to preserve spectral fidelity and generalize across regions. To address this, we propose EddyFlow, a representation learning framework for kilometer-scale sea surface temperature downscaling that balances predictive accuracy, scale-dependent structure, and regional generalization. EddyFlow is trained on the Gulf of St.~Lawrence and evaluated in zero-shot and few-shot settings on the Bay of Fundy and the Gulf of Mexico. EddyFlow demonstrates that physics-informed representation learning reduces zero-shot RMSE by 21%, achieves up to 85.6% skill relative to persistence on unseen domains, and maintains near-ideal spectral fidelity with a PSD ratio of $\approx 1.00$.

Subseasonal-to-seasonal (S2S) forecasting is societally critical, supporting decision-making in sectors ranging from water and agricultural management to disaster risk reduction, energy planning, and insurance. Achieving reliable predictions at these timescales requires representing the ocean and its dynamics, but traditional physics-based Ocean General Circulation Models (OGCMs), are computationally expensive and difficult to develop and improve because of the code complexity. In this work, we propose Neptune, an end-to-end data-driven framework for global ocean and sea-ice components emulation tailored for S2S timescales, up to 60 days. Neptune combines Convolutional Neural Networks (CNNs) and Spherical Fourier Neural Operators (SFNOs) to effectively capture local features and global cross-scale interactions, thereby obtaining a coherent representation of the ocean state. Forced by prescribed daily atmospheric fields, Neptune emulates ocean state variables, from temperature and salinity, to zonal and meridional currents, from sea surface height to sea ice thickness and concentration, with daily outputs at the ocean surface and through the water column. Specifically, we propose two variants of Neptune, Neptune-1 and Neptune-025, capable of emulating the ocean state at 1° and 0.25° resolution, respectively. Evaluated against a suite of metrics, including statistics (RMSE, CRPS and ACC), physical coherency (Ocean Heat Content, Eddy Kinetic Energy and Ice Brier Score) and climate indices (ENSO and Z20 metric, IOD), Neptune successfully reproduces the spatio-temporal evolution of the oceanic fields up to 60 days, and is stable over long timescales. Neptune provides compelling evidence that end-to-end data-driven ocean emulators can become a powerful component of next-generation S2S forecasting systems, emulating ocean state at high spatio-temporal resolution.

The ocean interior regulates Earth's climate but remains sparsely observed due to limited in situ measurements, while satellite observations are restricted to the surface. We present a depth-aware generative framework for reconstructing high-resolution three-dimensional ocean states from extremely sparse surface data. Our approach employs a conditional denoising diffusion probabilistic model (DDPM) trained on sea surface height and temperature observations with up to 99.9 percent sparsity, without reliance on a background dynamical model. By incorporating continuous depth embeddings, the model learns a unified vertical representation of the ocean states and generalizes to previously unseen depths. Applied to the Gulf of Mexico, the framework accurately reconstructs subsurface temperature, salinity, and velocity fields across multiple depths. Evaluations using statistical metrics, spectral analysis, and heat transport diagnostics demonstrate recovery of both large-scale circulation and multiscale variability. These results establish generative diffusion models as a scalable approach for probabilistic ocean reconstruction in data-limited regimes, with implications for climate monitoring and forecasting.