Abstract
Large language models (LLMs) have demonstrated strong performance in table understanding. However, they typically process table content and headers as linearized token sequences. This representation weakens the two-dimensional and hierarchical structural relationships encoded by multi-level row and column headers. Existing parameter-efficient fine-tuning methods incorporate basic row and column information but do not explicitly capture the rich structural dependencies induced by hierarchical table headers. We propose DeepTable, a structure-aware approach for table understanding with LLMs. DeepTable comprises two complementary components. Structural Attention Bias (SAB) introduces learnable biases into the attention logits to explicitly represent whether pairs of table tokens share the same row or column. Tree Path Encoding (TPE) represents each table token using the ancestor paths of its row and column headers, preserving its position within the multi-level table structure. We integrate DeepTable with TableLoRA (He et al., 2025) to inject structural information into parameter-efficient adaptation. Across three LLM backbones, DeepTable consistently improves the corresponding TableLoRA baselines on three table question answering benchmarks, achieving average gains of 7.42 points on HiTab, 3.23 points on WikiTQ, and 2.01 BLEU points on FeTaQA. These results demonstrate the effectiveness of the proposed structural biases across different LLM backbones.
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Complex tables with multi-level headers, merged cells and heterogeneous layouts pose persistent challenges for LLMs in both understanding and reasoning. Existing approaches typically rely on table linearization or normalized grid modeling. However, these representations struggle to explicitly capture hierarchical structures and cross-dimensional dependencies, which can lead to misalignment between structural semantics and textual representations for non-standard tables. To address this issue, we propose an Orthogonal Hierarchical Decomposition (OHD) framework that constructs structure-preserving input representations of complex tables for LLMs. OHD introduces an Orthogonal Tree Induction (OTI) method based on spatial--semantic co-constraints, which decomposes irregular tables into a column tree and a row tree to capture vertical and horizontal hierarchical dependencies, respectively. Building on this representation, we design a dual-pathway association protocol to symmetrically reconstruct semantic lineage of each cell, and incorporate an LLM as a semantic arbitrator to align multi-level semantic information. We evaluate OHD framework on two complex table question answering benchmarks, AITQA and HiTab. Experimental results show that OHD consistently outperforms existing representation paradigms across multiple evaluation metrics.
Bin Cao, Huixian Lu, Chenwen Ma +3
Sep 1, 2026cs.AI
Tables are ubiquitous across diverse domains, yet reasoning over them remains a significant challenge for modern large language models (LLMs). Current approaches typically linearize tables into sequences, inherently overlooking their intrinsic two-dimensional and hierarchical structure. To address this, we propose H2Table (Hierarchical Hypergraph-Enhanced Table Reasoning), a novel framework that represents complex tables as hierarchical nested hypergraphs. To process this representation, we design a tailored hypergraph encoder to facilitate message passing between hyperedges (headers) and nodes (cells), thereby perceiving the semantic entailment relationships between them within complex tables. Furthermore, we introduce a set of learnable query vectors acting as a lightweight bridge to extract representative structural embeddings from the encoder into the LLM. Experimental results demonstrate that our approach effectively handles complex table question answering tasks with hierarchical nested headers. Notably, on the HiTab dataset, H2Table achieves an average improvement of 22.88% over state-of-the-art baselines on highly complex tables with a nesting depth of four. Our code is available at: https://github.com/lila120/h2table.
Jia Ling, Yangfan Wang, Chen Tang +4
May 29, 2026cs.CL
Table question answering requires models to recover semantic relations encoded implicitly by two-dimensional layout, merged cells, and hierarchical headers. Current pipelines typically use HTML or Markdown as intermediate table representations, but these layout-oriented serializations introduce markup overhead and require large language models to infer header-cell alignments from row and column spans. We propose Semantic Triplet Restoration (STR), a protocol that rewrites each cell as an atomic fact <item path, feature path, value>, where the item path specifies the row-wise entity, the feature path specifies the hierarchical attribute, and the value contains the cell content. We also present TripletQL, a lightweight query-aware router that uses STR to select an appropriate rendering or filtered subset of triplets for each question. Across four Chinese and English table-QA benchmarks, STR matches or improves upon HTML-based baselines while reducing input tokens. The relative benefit grows for smaller language models and longer table contexts, suggesting that explicit semantic representations are especially useful under constrained inference budgets. Code and data are available at https://github.com/Phoenix-ni/STR.git .
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