Fundamental Dynamical Units for Physics-Informed Structural Inference from Perturbation Time-Series in Networked Systems

We investigate a structure-first approach to dynamical learning in which the organization of stateful interactions is prescribed explicitly rather than left entirely to a generic recurrent parameterization. We introduce causal recurrent units built from an ordered sequence of local, state-modulated transformations. The construction is motivated by wave-based interaction models, but the units studied here do not impose scattering, passivity, or energy-balance constraints. Because fixed recurrent dynamics, designed reservoir topologies, readout-only learning, and recurrent depth are already well established, the empirical question is deliberately narrower: does the proposed interaction organization provide a useful inductive bias under controlled computational conditions? We compare a one-layer structured model, a two-layer structured model, and a generic echo-state network (ESN), all with 12 recurrent states and the same strictly linear ridge readout. Each model family receives the same random-search budget on calibration data that are disjoint from the final test data, after which the selected hyperparameters are frozen. On a custom nonlinear identification task, the one-layer structured model attains a mean validation NMSE of 2.76 x 10^{-4}, compared with 3.19 x 10^{-4} for the two-layer model and 3.94 x 10^{-4} for the ESN. On NARMA10 the ordering reverses: the ESN attains 0.312, compared with 0.348 and 0.357 for the one- and two-layer structured models. Thus, the proposed organization can be competitive and advantageous on one task, but it is not universally superior; moreover, recurrent depth does not provide a systematic benefit under matched state dimension. The results support a task-dependent interpretation of structural inductive bias and position the present architecture as a controlled precursor to stronger wave- and system-theoretic constructions.

Many multivariate dynamical systems are observed only through trajectories, leaving the mechanisms governing their joint dynamics hidden. Existing approaches can impose interpretable dynamics or learn flexible state transitions, yet the resulting interaction structure is typically either specified in advance or left implicit within the learned dynamics. We introduce MF-Net, a recurrent dynamical model that represents all variables in a shared field state and updates this state through a learned relation law. Each variable carries a field component, and these components evolve jointly through a learnable mechanical transition. Here, mechanical refers to the relation-to-motion organization of the transition, where learned relations shape state-dependent flows, field responses, and motion tendencies that move the field state forward. The resulting structure is part of the rollout itself: learned relations influence how the field moves, and the same internal quantities support both forecasting and structural readout. Across known-law interaction systems, chaotic benchmarks, real neural recordings, and ecological time series, MF-Net achieves competitive short- and medium-horizon forecasting while retaining inspectable structural readout. On the 40-dimensional Lorenz--96 testbed, MF-Net achieves an eight-step $R^2$ of $0.798\pm0.018$; across five seeds, its learned relation matrix recovers the local coupling support with a local/nonlocal strength ratio of $19.80\pm1.00$ and Precision@$K$ of $1.000\pm0.000$. MF-Net provides a structure-readable dynamical modeling framework in which learned relations are trained through forward evolution and, on real data, interpreted as functional predictive couplings under appropriate observational limits.

Recovering latent interaction structures from multi-agent dynamics is important for understanding and predicting interacting systems. Trajectory-based structural inference has achieved promising performance, but conventional formulations assume that the trajectories of all modeled agents are available. In practice, agents may become unobserved at deployment because of limited sensing, occlusion, or communication failure. Existing studies have considered unseen-node estimation, structural inference under partial observations, and missing-value imputation, yet the joint recovery of hidden-agent trajectories and their interactions remains underexplored. We formulate this problem as structural inference under hidden agents. Its key difficulty is a circular dependency: recovering interactions involving a hidden agent requires an estimate of its trajectory, while trajectory reconstruction can itself benefit from structural information. To address this challenge, we propose Structural Inference under Hidden Agents (SIHA), which combines structure-agnostic initialization with structure-guided iterative refinement. SIHA reconstructs hidden trajectories from visible observations, infers interactions using Neural Relational Inference, and feeds the estimated structure back into hidden-state reconstruction through multi-strength structural attention and iterative state--structure updates. Experiments on three benchmark dynamical systems demonstrate consistent improvements in visible-to-visible structural inference, while also showing benefits in hidden-state reconstruction and future prediction. Motion-capture experiments with simulated whole-limb occlusion further demonstrate its effectiveness in realistic hidden-agent settings.