Authors: Fearghal O'Donncha, Nikos Papandroulakis, Jennie Korus, Abigail Langbridge, Alexander Timms, Konstantinos Topouzelis, Abdul Baseer Khan, Shree Rama Kamal Kumar Vegu, Mahtab Sarvmaili, Ryan Mowat, Rhanna Turberville, Tyler Sclodnick, Christopher Whidden
Organizations: IBM Research Europe, Dublin, Ireland · Hellenic Centre for Marine Research, Crete, Greece · Innovasea Marine Systems Canada, Nova Scotia, Canada · Imperial College London, United Kingdom · University of the Aegean, Greece · Dalhousie University, Halifax, Nova Scotia, Canada · RS Aqua, Portsmouth, United Kingdom · Scottish Sea Farms, Orkney, United Kingdom · DeepSense, Nova Scotia, Canada
This chapter explores how machine learning (ML) is transforming aquaculture, with a particular focus on enhancing decision-making processes and improving operational efficiency. The chapter is structured to first introduce the challenges in aquaculture and the role of AI and then provide an overview of ML techniques in the context of aquaculture, followed by applications, emerging trends, future directions, and case studies. The focus is on real-world applications of ML techniques, including Random Forest, Convolutional Neural Networks (CNNs), and Recurrent Neural Networks (RNNs), as well as emerging technologies such as Graph Neural Networks (GNNs) and large language models (LLMs). Key applications include biomass estimation, species recognition, behavioural analysis, and environmental forecasting. The chapter also highlights the synergy between ML and the Internet of Things (IoT) for real-time monitoring and decision support. Ultimately, ML-driven innovations have the potential to revolutionise fish farming, leading to more efficient, sustainable, and productive practices in the aquaculture industry.
Figures & tables
Figure 1: This diagram illustrates the key components and data flows in a large language model (LLM)-driven agent architecture. The central agent coordinates interactions between tools (e.g., calculators, code interpreters, APIs), memory systems (short-term and retrieval-augmented), and action modules. Cognitive processes such as planning, task decomposition, self-critique, and reflection support goal-oriented behavior and adaptive reasoning. Guardrails ensure system robustness through safety, factual reasoning, feedback, and monitoring. The architecture enables scalable, flexible execution of complex tasks in dynamic environments.
Figure 2: Mean average error (MAE) of 24-hour prediction for various tests of the model on the same cage it was trained on, a different cage from the same farm, a cage from a different farm within the same region and a cage on a farm in a different region.
Figure 3: Actual raw oxygen concentration and model output of a 24-hour prediction using 7 quantiles that indicate a confidence interval for the forecasted values. Data presented shows the output of the model on a single cage that was trained on the entire farm dataset.
Figure 4: Flowchart of the implemented methodology. Reproduced from Chatziantoniou et al. (2022) , https://doi.org/10.1016/j.rsase.2022.100865 , under the CC BY-NC-ND 4.0 licence.
Figure 5: The spatial distribution of (a) SST (b) Chl-a and (c) DO around Lesvos Island for four representative dates (fall, winter, spring, summer). Reproduced from Chatziantoniou et al. (2022) , https://doi.org/10.1016/j.rsase.2022.100865 , under the CC BY-NC-ND 4.0 licence.
Figure 6: The DT4GS Agent acts as a central orchestrator that coordinates specialized sub-agents and tools to support key operational tasks. It includes a planning module that decomposes tasks and delegates them to appropriate agents (e.g., anomaly detection, asset health, ship assistant). The memory and reflection modules track context and assess system performance. On the left, agent resources such as a data space, knowledge graph, and edge/cloud platforms provide contextual information. On the right, agent tools perform domain-specific functions such as anomaly detection, FMEA, and reporting. This modular, language-driven framework enables flexible, autonomous interaction with complex ship systems.
Figure 7: Schematic of the agentic workflow using a planner–router architecture. The Planning Agent parses the initial user prompt and assigns subtasks to specialized agents (e.g., Navigation, FMEA, Ship Exploration). The Re-router coordinates execution flow by determining whether further steps are needed, enabling iterative multi-agent collaboration.
Figure 8: Sample trajectory illustrating the step-by-step process of responding to a user query regarding anomalies in a ship engine. It demonstrates the integration of multiple tools—such as data retrieval, anomaly detection, and failure mode analysis—to detect, visualize, and recommend maintenance strategies. The process culminates in generating a work order based on detected anomalies, filtered by external factors like speed and ambient pressure, ensuring informed decision-making for condition-based maintenance.
ML Technique
Application in Aquaculture
Benefits
TRL
CNNs
Fish behavior and health monitoring via computer vision
Non-invasive, continuous visual monitoring
6–8
GNNs
Modeling interactions among environmental and biological systems
Captures system connectivity and spatial relationships
2–4
SVR
Forecasting dissolved oxygen using satellite or sensor data
Site-specific, accurate environmental predictions
7–8
LLMs
Natural language interfaces, log analysis, document summarization
Scalable knowledge extraction across diverse sources
2–4
AI Agents
Autonomous task execution and adaptive response agents
Decision automation and reduced manual intervention
2–4
Random Forests / Decision Trees
Classification and anomaly detection in water quality or sensor data
Robust predictions with explainable outputs
7–9
Table 1: Key machine learning techniques applied in aquaculture, including typical use cases, benefits, and estimated TRLs based on current research and deployments.
Understanding and forecasting lake dynamics is critical for monitoring water quality and ecosystem health across lakes and reservoirs. While machine learning methods have been recently applied to ecological time-series data, existing works assume regular sampling in time and depth, and struggle to generalize across lakes with heterogeneous variables, depths, and observation patterns. To address these limitations, we introduce LakeFM, a foundation model for aquatic systems, pre-trained on large-scale ecological datasets comprising both simulated and observed lakes. Through extensive empirical evaluation, we show that LakeFM learns meaningful representations spanning broader lake-level characteristics, and achieves competitive or often superior-forecasting performance compared to existing time-series foundation and non-foundation models, while producing physically plausible predictions consistent with real-world lake dynamics.
Abhilash Neog, Sepideh Fatemi, Medha Sawhney +9
Virginia Tech Blacksburg, VA, USA · Grand Valley State University Muskegon, MI, USA · University of Wisconsin - Madison Madison, WI, USA +2
Autism spectrum disorder (ASD) is a developmental disability characterized by challenges in social interaction and communication. As the causes of ASD remain unclear, identifying relevant features and hidden correlations is crucial for early diagnosis. This systematic review evaluates 55 studies from 2017 to 2023 on the application of machine learning (ML) techniques to ASD. The primary objective is to examine recent ML applications in ASD research, identifying trends, techniques, and datasets that enhance diagnosis and treatment. Supervised learning methods dominate, as they align well with ASD diagnostic needs; however, the role of deep learning is expanding with greater data availability. Emerging techniques based on hybrid methods, where unsupervised, deep learning, and fuzzy logic could be included, will be interesting to observe in the future. The review highlights key challenges and opportunities, particularly the need for models that can integrate complex data -such as genetic and clinical information- to improve diagnostic accuracy and treatment outcomes. Additionally, incorporating innovative data sources, like wearable devices and biometric sensors, could enable continuous and non-intrusive monitoring, providing a more holistic understanding of ASD. Findings emphasize that addressing current challenges requires interdisciplinary collaboration and expanded datasets tailored to ASD. Future ML models will benefit from broader multimodal data integration, enabling researchers to more comprehensively address the complexities of ASD.
Rafael Muñoz-Terol, Jesús Peral, Sandra Amador +1
Lucentia Research Group, Department of Software and Computing Systems, University of Alicante, 03690 Alicante, Spain · U.I. for Computer Research, Alicante, Spain · Department of Computer Science Technology and Computation, University of Alicante, 03690 Alicante, Spain
Livestock growth prediction is essential for optimising farm management and improving the efficiency and sustainability of livestock production, yet it remains underexplored due to limited large-scale datasets and privacy concerns surrounding farm-level data. Existing biophysical models rely on fixed formulations, while most machine learning approaches are trained on small, isolated datasets, limiting their robustness and generalisability. To address these challenges, we propose LivestockFL, the first federated learning framework specifically designed for livestock growth prediction. LivestockFL enables collaborative model training across distributed farms without sharing raw data, thereby preserving data privacy while alleviating data sparsity, particularly for farms with limited historical records. The framework employs a neural architecture based on a Gated Recurrent Unit combined with a multilayer perceptron to model temporal growth patterns from historical weight records and auxiliary features. We further introduce LivestockPFL, a novel personalised federated learning framework that extends the above federated learning framework with a personalized prediction head trained on each farm's local data, producing farm-specific predictors. Experiments on a real-world dataset demonstrate the effectiveness and practicality of the proposed approaches.
Shoujin Wang, Mingze Ni, Wei Liu +6
University of Technology Sydney, Sydney, Australia · AgriWebb, Sydney, Australia · Queensland University of Technology, Brisbane, Australia