cs.CVSep 12, 2026

A Voxel-Spacing-Aware Extension of PyRadiomics for Anisotropic Texture Analysis

Authors: David Corral Fontecha, Juan Miranda Bautista, Pablo Menendez Fernández-Miranda, Andrea Trapote Fernandez, Lara Lloret Iglesias, Jose A. Vega

Organizations: Department of Radiology, Complejo Asistencial Universitario de León, León, Spain · Department of Radiology, Hospital Universitario Rey Juan Carlos, Móstoles, Madrid, Spain · Health Research Institute of the Jiménez Díaz Foundation, IIS-FJD, Madrid, Spain · Department of Physical Therapy, Occupational Therapy, Rehabilitation and Physical Medicine, Rey Juan Carlos University, Madrid, Spain · Department of Morphology and Cell Biology, Grupo SINPOS, Universidad de Oviedo, Oviedo, Spain · Universidad de Oviedo, Oviedo, Spain · Advanced Computing and e-Science Group, IFCA-CSIC, Santander, Spain · Facultad de Ciencias de la Salud, Universidad Autónoma de Chile, Providencia-Santiago, Chile

Abstract

Radiomic texture features are commonly extracted from anisotropic CT and MRI acquisitions, where identical voxel offsets may represent different physical distances. We implemented and validated a voxel-spacing-aware extension of PyRadiomics that incorporates spacing information without generating interpolated gray levels. The framework operates across the Python frontend, C wrapper, and computational backend. GLCM uses anisotropy-relative feature-level angular aggregation, NGTDM uses anisotropy-relative weighted neighborhood averaging, and GLRLM, GLDM, and GLSZM are computed on a finite-volume zero-order-hold representation derived from the native anisotropic grid. Synthetic 3D phantoms were used for software validation. The modified implementation reproduced standard PyRadiomics exactly when spacing-aware mode was disabled and remained equivalent under isotropic spacing across 75 texture features. Under anisotropic spacing, the method selectively modified texture families and was numerically distinct from nearest-neighbor, linear, and B-spline resampling. Computational profiling showed moderate runtime and memory increases, while sensitivity analyses quantified finite-volume rounding effects and confirmed that spacing-aware differences persisted across binWidth settings. The framework provides a backward-compatible technical basis for future evaluation of spacing-aware radiomics in heterogeneous medical imaging datasets.

Figures & tables

Explore similar work

CardsList
  1. Physically Aware Radiomics Without Interpolation: Disentangling Voxel Geometry and Signal Modification in CT and MRI

    Jul 14, 2026David Corral Fontecha, Juan Miranda Bautista, Pablo Menendez Fernández-Miranda +3Magnetic Resonance ImagingRadiomics

  2. Towards Voxel Spacing Consistency for Medical Image Segmentation

    Jun 30, 2026Xin You, Runze Yang, Minghui Zhang +63D Medical Image Segmentation

  3. Negative controls reveal volume-driven confounding in radiomics and imaging foundation model features

    Jul 30, 2026Katy L. Scott, Sejin Kim, Joshua Siraj +6Medical ImagingMedical Imaging Foundation Models