Rachel: A general-purpose language model directs and revises retrosynthetic routes
Authors: Qisheng Li, Shunchao Jiang, Chen Qi, Xin Su, Da Han, Guangyong Chen
Organizations: Hangzhou Institute of Medicine, Chinese Academy of Sciences, Hangzhou, China · Beijing Advanced Innovation Center for Soft Matter Science and Engineering and State Key Laboratory of Organic–Inorganic Composites, Beijing Key Laboratory of Bioprocess, College of Life Science and Technology, Beijing University of Chemical Technology, Beijing, China · Zhenzhida Biotechnology (Shanghai) Co., Ltd. · State Key Laboratory of Organic–Inorganic Composites, Beijing Advanced Innovation Center for Soft Matter Science and Engineering, College of Life Science and Technology, Beijing University of Chemical Technology, Beijing 100029, China · Zhejiang Key Laboratory of Functional Nucleic Acids for Basic and Clinical Application, Hangzhou Institute of Medicine, Chinese Academy of Sciences, Hangzhou, China · Institute of Molecular Medicine, Renji Hospital, School of Medicine, Shanghai Jiao Tong University, Shanghai, China
Retrosynthetic planning advances through decisions that reshape the remaining chemical problem: a locally plausible disconnection can leave precursors whose chemoselectivity constraints complicate the rest of the route. Existing planners often channel model proposals through search or template procedures, leaving open whether a general-purpose large language model (LLM) can itself sustain and revise route strategy. We developed Rachel, a stateful environment that executes and checks LLM-directed chemistry but prescribes neither a search policy nor a stopping rule. Without supplied reference routes or route-level solutions, GPT-5.5 achieved strict closure for 111 of 120 PaRoutes120 targets and 24 of 25 targets in the separate RF25 difficult-target cohort. RF25 was drawn largely from studies published after GPT-5.5's reported knowledge cutoff. Closure required complete routes and independent source resolution of every terminal precursor after planning. On a shared PaRoutes subset, forward-model support exceeded that of most comparator methods, and Rachel received the highest mean overall route score from both method-blinded LLM evaluators. Recorded trajectories showed continued model-proposed chemistry, with revised strategies carried into subsequent steps. Replacing LLM route decisions with fixed policies reduced strict closure to 6-15/120 despite continued local chemical execution; restricting planning support also reduced closure in RF25. Within Rachel, a general-purpose LLM coordinated successive chemical choices and revised its strategy as earlier decisions reshaped the remaining problems.
State Key Laboratory of Analytical Chemistry for Life Science, Kuang Yaming Honors School, Chemistry and Biomedicine Innovation Center (ChemBIC), ChemBioMed Interdisciplinary Research Center at Nanjing University, Nanjing University, Nanjing 210023, China · School of Medicine, Guangxi University, Nanning, 530004, China