AI-Enhanced Hyperspectral Imaging for Intraoperative Detection of Low-Grade Glioma: A Clinical Study
Authors: Siri Willems, Ishika Jain, Jens De Winne, Siri Luthman, Hamed Zivari Adab, Roeland Vandebriel, Anna Alperovich, Xiaohan Zhang, +4 more
Organizations: imec, Kapeldreef 75, Leuven, 3001, Belgium · Department of Computer Science UAntwerp-imec, Sint-Pietersvliet 7, Antwerp, 2000, Belgium · Department of Telecommunications and Information Processing, IPI-imec, Sint-Pietersnieuwestraat 41, Ghent, 9000, Belgium · Carl Zeiss AG, Corporate Research & Technology, Carl-Zeiss-Str. 22, Oberkochen, 73447, Germany · Carl Zeiss Meditec AG, Rudolf-Eber-Str. 11, Oberkochen, 73447, Germany · Research Group Experimental Neurosurgery and Neuroanatomy, Dept Neurosciences, KU Leuven, Leuven Brain Institute and Dept. Neurosurgery, UZ Leuven, Herestraat 49, Leuven, 3000, Belgium
Current image-guided neuronavigation techniques, such as intraoperative MRI and ultrasound, are limited by high costs, limited sensitivity and operational complexity. There is a clear need for more efficient systems to enhance intra-operative tumor detection and improve patient outcomes for intrinsic brain tumor resection. Whereas previous intraoperative brain HSI studies have predominantly investigated high-grade gliomas, glioblastomas, or mixed-grade cohorts, this clinical study focuses specifically on low-grade gliomas (LGGs). LGGs strongly resemble normal brain under white light conditions on the operative microscope. This study characterizes spectral differences between healthy and tumor tissue and provides a paired comparison of HSI- and RGB-based classification at matched tissue locations and under identical patient-level data splits. Tumor regions showed consistently lower reflectance, which may be associated with differences in hemoglobin concentration and oxygenation. A range of classification models was evaluated. The 3D CNN, which integrates spectral and spatial features, achieved the highest median ROC-AUC of 74.5%, compared with 67.9% for the spectral-only XGBoost model and 64.0% for the RGB-based model. These results support further investigation of HSI for low-grade glioma classification and quantify its performance relative to conventional RGB imaging in this cohort.
Figures & tables
Specifications
InVivo-LGG
HELiCoiD [ 27 ]
Tumor types
LGG
Mix of brain tumors
Number of patients
18
34
Number of hypercubes
75
61
Maximum spatial resolution in pixels
1600×1600
741×1004
Spectral range
470–787 nm
400–1000 nm
Spectral resolution
10–15 nm
2–3 nm
Table 1: Overview of dataset characteristics for both internal and public datasets used in the study.
Figure 1: (a) Clinical setup. (b) Reference target used to align the RGB and HSI cameras. (c) Image-acquisition protocol. (d) RGB–HSI calibration results.
Figure 2: RGB image, histology-confirmed ground truth, initial superpixels, metric distributions, filtered superpixels, and final filtered ground truth.
Figure 3: Visual overview for calculating the intra-patient variability (left) and inter-patient variability (right).
Figure 4: Overview of (a) individual neural-network building blocks and (b) the evaluated neural-network architectures.
Figure 5: Overview of the patient and superpixel distribution across the six outer folds of the nested patient-level cross-validation design. Each fold is used once as the independent outer test set, while the remaining five folds are used for inner cross-validation and model optimization.
Figure 6: Mean spectra of healthy (green) and tumor (blue) tissue in the internal InVivo-LGG dataset and the public HELiCoiD dataset.
Figure 7: SAM values in degrees for (a) intra-patient variability and (b) inter-patient variability. In (a), each dot represents a patient, with green dots indicating healthy tissue and blue dots indicating tumor tissue; highlighted circles represent median values. In (b), each dot represents a pair of patients.
Models
#patients
F1
ACC
b. ACC
AUC-ROC
PREC
RECALL
XGB
16
0.68 ± 0.09
0.68 ± 0.06
0.68 ± 0.06
0.68 ± 0.06
0.68 ± 0.13
0.74 ± 0.08
2DCNN-All
16
0.60 ± 0.11
0.64 ± 0.07
0.67 ± 0.06
0.73 ± 0.07
0.67 ± 0.15
0.66 ± 0.15
2DCNN-ch12
16
0.58 ± 0.13
0.63 ± 0.09
0.67 ± 0.08
0.74 ± 0.09
0.68 ± 0.15
0.64 ± 0.16
2DCNN-ch3
16
0.59 ± 0.11
0.63 ± 0.08
0.67 ± 0.08
0.74 ± 0.10
0.69 ± 0.13
0.63 ± 0.16
3DCNN
16
0.64 ± 0.10
0.66 ± 0.08
0.69 ± 0.07
0.75 ± 0.08
0.69 ± 0.13
0.70 ± 0.14
2DCNN-RGB
16
0.56 ± 0.09
0.59 ± 0.05
0.59 ± 0.06
0.64 ± 0.08
0.63 ± 0.13
0.55 ± 0.10
Table 2: Test-set classification metrics summarized per patient as the median ± 95% confidence interval. Boldface indicates a statistically significant paired difference between that HSI-based model and 2DCNN-RGB for the corresponding metric. No statistically significant differences were observed among the HSI-based model families.
Figure 8: Scatterplot of patient-level F1 and AUC-ROC values obtained from the six outer test folds.
Figure 9: Visual examples of patient 13
Figure 10: Visual examples of patient 18
Figure 11: Visual examples of patient 2
Appendix figures & tables3 assets
Supplementary material from the paper’s appendix.
Appendix
Figure 12: Examples of both good and bad registrations of RGB image and corresponding contours with HSI. Bad registrations were manually registered afterwards.
Prediction
Positive
Negative
Ground truth
Positive
True positive (TP)
False Negative (FN)
Negative
False Positive (FP)
True Negative (TN)
Appendix
Table 4: Binary confusion matrix.
Figure 13: Hyperparameter optimization results for the cross-validations for all runs. Each sample in the boxplot represents the cross-validation score for a run given the combination of hyperparameters
Hyperspectral Imaging (HSI) is a promising modality for intraoperative assessment of resection margins in Breast-Conserving Surgery (BCS), but its clinical translation requires aligning the inherently 2D spectral information onto the 3D shape of the excised tissue so that suspicious regions can be precisely localized for targeted follow-up. We present a fully automated, calibration-free pipeline that produces a 3D hyperspectral point cloud of an ex-vivo lumpectomy specimen from a set of consumer-camera RGB images and a single top-down HSI acquisition. The 3D geometry is reconstructed with a deep-learning Structure-from-Motion backbone, stabilized in a metric reference frame by a custom bundle adjustment that enforces consistency on the corners of four ArUco markers placed around the specimen. The HSI cube is then registered to the reconstruction without recovering the HSI camera pose: the markers, visible in both modalities, define 16 corner correspondences that drive a planar homography, and 3D coordinates are recovered by lookup on an orthographically rendered depth map. Evaluated on two ex-vivo lumpectomy specimens, the pipeline achieves a median 3D registration error below 1~mm and a 2D reprojection error below 0.02 mm, with a total per-specimen processing time under 4 minutes on accelerated hardware. These results support the feasibility of integrating HSI-guided spatial localization into intraoperative margin assessment workflows for breast-conserving surgery.
Anna Bicchi, Alberto Rota, Leonardo Passoni +5
Department of Electronics, Information and Bioengineering (DEIB), Politecnico di Milano, Milan, Italy · Department of Physics, Politecnico di Milano, Milan, Italy
Accurate intraoperative assessment of glioma infiltration is essential for maximizing tumor resection while preserving functional brain tissue. Fluorescence lifetime imaging (FLIm) offers real-time, label-free biochemical contrast, but its clinical utility is challenged by biological heterogeneity, class imbalance, and variability in histopathological labeling. We present a data-centric AI (DC-AI) framework that integrates confident learning (CL), class refinement, and targeted label evaluation to develop a robust multi-class FLIm classifier for glioblastoma (GBM) resection margins. FLIm data were collected from 192 tissue margins across 31 newly diagnosed IDH-wildtype GBM patients and initially labeled into seven tumor cellularity classes by an expert neuropathologist. CL was applied to quantify FLIm point-level confidence, identify label inconsistencies, and guide iterative class merging into a three-class scheme ("low", "moderate", "high"). The resulting high-fidelity dataset enabled training a model that achieved 96% accuracy in the three-class task. SHAP analysis revealed class-specific FLIm feature importance, highlighting distinct optical signatures across the infiltration spectrum. Targeted FLIm analysis further identified biological (e.g., gray matter composition) and acquisition-related (e.g., blood contamination) contributors to low-confidence predictions. Blinded re-evaluation of margins flagged by CL demonstrated intra-pathologist variability, underscoring the value of selective relabeling rather than exhaustive review. Together, these findings demonstrate that a DC-AI framework can systematically improve data reliability, enhance model robustness, and refine biological interpretation of FLIm signals, supporting the development of clinically actionable optical tools for real-time glioma margin assessment.
Silvia Noble Anbunesan, Mohamed Abul Hassan, Jinyi Qi +4
University of California, Davis · Department of Biomedical Engineering · Department of Pathology and Laboratory Medicine +1
Glioma grading from tumor contours is often treated as a pixel problem even when the signal of interest is shape. We align closed contours with a functional shape-alignment framework, separate global deformation from residual Fourier shape, and organize these quantities as frequency-ordered tokens. In five-fold patient-disjoint cross-validation on BraTS~2020 tumor contours, with model selection performed using grouped inner validation, a compact multilayer perceptron (MLP) achieves the highest mean balanced accuracy at 71.5%, compared with 65.9% for ResNet-18 and 63.3% for ViT-Tiny. It also gives the highest mean low-grade glioma F1 at 54.9%. Its pooled out-of-fold balanced accuracy is 72.4% (patient-bootstrap 95% CI: 66.4--77.8%). The selected MLPs use 2.9k--117.3k parameters across folds, at least 46 times fewer than the pixel baselines. In a controlled noise-free simulation, shape-based models reach 56.3--71.5% balanced accuracy while the pixel models remain at 50.0--52.5%. This work demonstrates how incorporating a shape-based inductive bias at the representation level can improve interpretability and scalability while enabling substantial dimensionality reduction.
Puneet Velidi, Michelle F. Miranda, Farouk Nathoo +2
Department of Mathematics and Statistics University of Victoria · Department of Computer Science University of Victoria · D´epartement de math´ematiques Universit´e du Qu´ebec `a Montr´eal