OceanTensorCube and ST-MMT: A Multimodal Data and Transformer System for Seven-Day Forecasting of Pyropia Bleaching

Pseudo-nitzschia diatoms pose recurrent risks to coastal ecosystems and shellfish harvesting along the Portuguese Atlantic coast. Here we develop and evaluate a spatio-temporal machine-learning framework to predict harmful algal bloom (HAB) occurrence using exclusively satellite-derived predictors under realistic forecasting constraints. We characterised environmental and biological variability across shellfish production zones (L1-L9) using 5,882 observations, providing system-wide context. Predictive models were developed for zones L1-L2, a hotspot for Pseudo-nitzschia and domoic acid events, using a decade-long dataset (2013-2023; 1,440 observations; more than 1,000 satellite-based predictors including sea surface temperature, an upwelling index, chlorophyll-a, and plankton functional types). Sampling locations were partitioned into ecologically meaningful sub-regions using a river-aware spatial clustering scheme. A stringent spatio-temporal cross-validation strategy that simultaneously withholds entire years and spatial clusters prevents leakage and closely mimics real-world forecasting conditions. HAB occurrence proved moderately predictable across model classes and feature configurations. Ensemble tree-based methods achieved the strongest discrimination: Random Forest reached 0.74 +/- 0.05 with environmental predictors; Extra Trees reached 0.77 +/- 0.06 with biological variables added. Feature-importance analyses revealed that seasonal structure, spatial context, and lagged environmental conditions dominate model decisions, while biological indicators refine bloom likelihood within physically favourable periods. The framework demonstrates operationally relevant skill for satellite-supported HAB early-warning systems along eastern boundary upwelling coasts.

Marine biogeochemical forecasting is increasingly important for managing marine ecosystems and the carbon cycle, yet global, seasonal forecast products lag far behind physical oceanography, held back by the complexity of the processes involved and by data scarcity. We introduce BG4Sea, which to our knowledge is the first global, data-driven system to produce multivariate seasonal forecasts of the marine biogeochemical state. BG4Sea is a modular architecture with a column autoencoder that compresses the vertical column into a low-dimensional latent space, a latent forecaster propagates this representation forward in time, a surface-forcing conditioner that injects physical boundary information via Feature-wise Linear Modulation (FiLM), and a horizontal-coupling module that incorporates neighboring-column context through cross-attention. The model is trained and evaluated on the global ocean reanalysis BIORYS4 (NEMO/PISCES), and produces six-month forecasts at 1/4 degree, monthly resolution for dissolved chemistry, biology, and carbon-pool variables, outperforming persistence and climatology across most variables and lead times. We position BG4Sea as an interpretable baseline for future, more expressive approaches, and discuss predictability attribution to each component, alongside the model's structural limitations.

Subseasonal-to-seasonal (S2S) forecasting is societally critical, supporting decision-making in sectors ranging from water and agricultural management to disaster risk reduction, energy planning, and insurance. Achieving reliable predictions at these timescales requires representing the ocean and its dynamics, but traditional physics-based Ocean General Circulation Models (OGCMs), are computationally expensive and difficult to develop and improve because of the code complexity. In this work, we propose Neptune, an end-to-end data-driven framework for global ocean and sea-ice components emulation tailored for S2S timescales, up to 60 days. Neptune combines Convolutional Neural Networks (CNNs) and Spherical Fourier Neural Operators (SFNOs) to effectively capture local features and global cross-scale interactions, thereby obtaining a coherent representation of the ocean state. Forced by prescribed daily atmospheric fields, Neptune emulates ocean state variables, from temperature and salinity, to zonal and meridional currents, from sea surface height to sea ice thickness and concentration, with daily outputs at the ocean surface and through the water column. Specifically, we propose two variants of Neptune, Neptune-1 and Neptune-025, capable of emulating the ocean state at 1° and 0.25° resolution, respectively. Evaluated against a suite of metrics, including statistics (RMSE, CRPS and ACC), physical coherency (Ocean Heat Content, Eddy Kinetic Energy and Ice Brier Score) and climate indices (ENSO and Z20 metric, IOD), Neptune successfully reproduces the spatio-temporal evolution of the oceanic fields up to 60 days, and is stable over long timescales. Neptune provides compelling evidence that end-to-end data-driven ocean emulators can become a powerful component of next-generation S2S forecasting systems, emulating ocean state at high spatio-temporal resolution.