Kernel Methods

Recent studies have reported $\textit{saturation effects}$ and $\textit{multiple descent behavior}$ in large dimensional kernel ridge regression (KRR). However, these findings are predominantly derived under restrictive settings, such as inner product kernels on sphere or strong eigenfunction assumptions like hypercontractivity. Whether such behaviors hold for other kernels remains an open question. In this paper, we establish a broad, new family of large dimensional kernels and derive the corresponding convergence rates of the generalization error. As a result, we recover key phenomena previously associated with inner product kernels on sphere, including: $i)$ the $\textit{minimax optimality}$ when the source condition $s\le 1$; $ii)$ the $\textit{saturation effect}$ when $s>1$; $iii)$ a $\textit{periodic plateau phenomenon}$ in the convergence rate and a $\textit {multiple-descent behavior}$ with respect to the sample size $n$.

We present a physics-informed framework for system identification based on randomized stable atomic features. Impulse responses are represented as random superpositions of stable atoms, namely damped complex exponentials associated with poles sampled inside a prescribed disk. Identification is then cast as a convex regularized least-squares problem with optional linear, second-order-cone, and KYP constraints. The approach generalizes random Fourier and random Laplace features to the damped, nonstationary regime relevant to engineering systems while retaining modal interpretability and scalable finite-dimensional computation. The main analytic point is an operator-theoretic Disk-Bochner viewpoint: positive measures over stable poles generate positive-definite kernels with a radius-dependent shift defect, while a converse scalar disk moment representation for an arbitrary kernel is characterized by subnormality of the canonical shift. We prove this statement, establish an RKHS-to-l1 embedding, show that sampled poles induce a valid finite atomic gauge, discuss random-feature convergence, and state sparse-recovery guarantees conditionally on the restricted-eigenvalue properties of the realized disk-Vandermonde or input-output design matrix. We also connect the normalized transfer function problem to Nevanlinna-Pick interpolation and LFT set-membership. The framework directly encodes stability margins, modal localization, DC-gain bounds, monotonicity, passivity, relative degree, settling-time targets, and time/frequency-domain error bounds. Numerical comparisons illustrate how physically meaningful priors can compensate for poor excitation and improve constrained impulse-response recovery in an under-informative data setting.

Deep learning excels at prediction but often lacks finite-sample guarantees and calibrated uncertainty; RKHS (Reproducing Kernel Hilbert Space)-based methods provide those guarantees but struggle to adapt in high dimensions. We propose Wahkon, a deep RKHS superposition network that unifies Kolmogorov's superposition principle with RKHS regularization in the smoothing-spline tradition of Wahba. This yields a finite-dimensional deep representer theorem that makes training tractable and provides explicit layerwise complexity control. We show the penalized estimator is exactly the MAP (maximum a posteriori) estimate under a hierarchical Gaussian-process prior, extending the spline/GP duality to deep compositions. Using metric-entropy arguments, we establish minimax-optimal convergence rates under mild smoothness and clarify how depth and width trade off with regularity. Empirically, Wahkon outperforms multilayer perceptrons, Neural Tangent Kernels, and Kolmogorov--Arnold Networks across simulation benchmarks and a single-cell CITE-seq study. By unifying Kolmogorov's superposition principle with RKHS regularization, Wahkon delivers accuracy, interpretability, and statistical rigor in a single framework.

Generative models are often conditioned on a small set of examples via cross-attention. Under the Gaussian optimal-transport path, we show that the exact velocity field induced by a finite support set is a Nadaraya--Watson kernel smoother whose bandwidth decreases with flow time, from broad averaging at early steps to nearest-neighbor at late steps. A single Gaussian-kernel attention head exactly computes this field, connecting cross-attention conditioning to classical kernel theory. The theory predicts three failure regimes: nearest-neighbor collapse of the kernel at high dimension, mismatch between the isotropic kernel and the data geometry, and insufficient support for nonparametric estimation. Experiments on Gaussian mixtures, spherical shells, and DINOv2 ImageNet features confirm that learned conditioning improves in precisely these regimes, and that IP-Adapter's cross-attention implements approximate NW smoothing in practice.

Modern Bayesian optimization and adaptive sampling methods increasingly rely on nonlinear parametric models, yet theoretical guarantees for such models under adaptive data collection remain limited. Existing analyses largely focus on Gaussian processes, kernel machines, linear models, or linearized neural approximations, leaving a gap between theory and the nonlinear models used in practice. We develop a kernel based framework for analyzing regularized nonlinear parametric models trained on adaptively collected data. Our approach uses kernels over the parameter space to induce reproducing kernel Hilbert space structures over the corresponding model class, yielding confidence bounds for models trained with broad classes of regularized convex losses. We show how these bounds can support convergence guarantees for nonlinear acquisition and surrogate models, including randomized regularized policies that select points by maximizing a trained random model. These results provide a unified route to analyzing nonlinear parametric models in Bayesian optimization and related adaptive optimization settings.

Discrete automated processes in industrial and cyber-physical systems often exhibit a repetitive structure in which successive repetitions follow a common trajectory while differing in duration, amplitude, and fine-scale dynamics. Such \emph{approximately periodic} behavior poses a challenge for Gaussian Processes (GP) modeling: strictly periodic models suppress inter-repetition variability, while non-periodic models fail to capture the strong structural regularities required for generation. In this work, we propose a stochastic generative model for approximately periodic time series. The model is based on a GP whose posterior is modulated by a novel kernel. Our approach decouples intra-repetition structure from inter-repetition variability through a two-stage construction which yields a generative distribution with a identical mean function across repetitions, while allowing smooth variation between repetitions. The modeling choices are supported by an implementation in which realistic synthetic trajectories are generated from toy datasets.

Drifting Models have emerged as a new paradigm for one-step generative modeling, achieving strong image quality without iterative inference. The premise is to replace the iterative denoising process in diffusion models with a single evaluation of a generator. However, this creates a different trade-off: drifting reduces inference cost by moving much of the computation into training. We introduce DriftXpress, an accelerated formulation of drifting models based on projected RKHS fields. DriftXpress approximates the drifting kernel in a low-rank feature space. This preserves the attraction-repulsion structure of the original drifting field while reducing the cost of field evaluation. Across image-generation benchmarks, DriftXpress achieves comparable FID to standard drifting while reducing wall-clock training cost. These results show that the training-inference trade-off of drifting models can be pushed further without giving up their one-step inference advantage.

Periodic signals are critical for representing physical and perceptual phenomena. Scalar, real angular measures, e.g., radians and degrees, result in difficulty processing and distinguishing nearby angles, especially when their absolute difference exceeds pi. We can avoid this problem by using real-valued, periodic embeddings in high-dimensional space. These representations also allow us to control the nature of their dot product similarities, allowing us to construct a variety of different kernel shapes. In this work, we aim of highlight how these representations can be constructed and focus on the formalization of Dirichlet and periodic Gaussian kernels using the neurally-plausible representation scheme of Spatial Semantic Pointers.

We present a theoretically grounded Gaussian process framework that leverages neural feature maps to construct expressive kernels. We show that the learned feature map can be interpreted as an optimal low-rank approximation to a Gram matrix derived from an implied RKHS, from which we establish consistency of the GP posterior. We further analyse the spectral properties of the induced kernels and introduce product feature-map kernels to address oversmoothing. This simple yet powerful approach enables fast, scalable, and accurate exact GP inference with minimal upfront work. The flexibility of kernel design supports seamless application to both regression and classification tasks across diverse data modalities, including tabular inputs and structured domains such as images. On benchmark datasets, this approach surpasses pre-existing methods in terms of accuracy and training and prediction efficiency.

Bayesian optimization (BO) is an efficient framework for optimizing expensive black-box functions. However, it is typically formulated as learning an end-to-end mapping from inputs to scalar objectives, thereby discarding the potentially rich information whenever a structured system output is available. In this work, we study Bayesian optimization over a vector-valued operator with structured measurements, where each measurement observes multidimensional or functional outputs, e.g., trajectories or spatial fields, rather than a single scalar value. The objective is then defined as a linear functional of these measurements. This allows each observation to reveal substantially richer information about the underlying system compared to scalar observations. Assuming the unknown operator lies in a vector-valued reproducing kernel Hilbert space (RKHS), we derive high-probability concentration bounds for the kernel ridge regression (KRR) estimator directly in the measurement space, characterizing uncertainty in a general Hilbert space. Building on these results, we propose an algorithm based on the upper confidence bound (UCB) acquisition function with regret guarantees under mild assumptions, recovering sublinear rates for common kernels. Empirically, we demonstrate that leveraging structured measurements leads to improved sample efficiency by enabling efficient transfer of information across objectives and adaptation to time-varying settings.

Providing non-conservative uncertainty quantification for function estimates derived from noisy observations remains a fundamental challenge in statistical machine learning, particularly for applications in safety-critical domains. In this work, we propose novel non-asymptotic probabilistic uniform error bounds for kernel-based regression. Compared to related bounds in the literature that are restricted to (conditionally) independent sub-Gaussian noise, our bounds allow to consider a broad class of non-Gaussian distributions, such as sub-Gaussian, bounded, sub-exponential, and variance/moment-bounded noise. Moreover, our results apply to correlated and uncorrelated noise. We compare our proposed error bounds with existing results in terms of the induced uncertainty region and their performance in safe control, demonstrating the tightness of the proposed bounds.

Coherent, continuous spatial representations are critical for synthesizing physical and perceptual phenomena into a single representational space. Radial basis kernels provide a path forward for this type of distributed representation. In this work, we aim to characterize and analyze common radial basis kernels realizable in the neurally-plausible framework of spatial semantic pointers. Further, we analyze previous radial basis kernel work based on grid cell-like representations and demonstrate that such representations are both capable of and optimal for realizing radial basis kernels.

We introduce CUTS-GPR, a new method for performing numerically exact GPR in high-dimensional settings. The key component of CUTS-GPR is an extremely fast kernel matrix-vector product, which exhibits near-linear or even linear scaling with the amount of training data, $N$, and low-order polynomial scaling with dimensionality, $D$. This is obtained by combining an additive kernel with an incomplete grid and exploiting the resulting structure of the kernel matrix. The scalability of the matrix-vector product is verified by benchmarks with billions of data points and thousands of dimensions. We demonstrate the end-to-end scalability of CUTS-GPR by running full GPR calculations, including hyperparameter optimization, on synthetic datasets with up to $N = 4\,494\,001$ and $D = 500$. As a realistic and challenging test, we finally apply CUTS-GPR to a set of ten potential energy surfaces (PESs) with $N = 447\,265$ and $D = 24$. The calculations are completed in a matter of hours, showing that CUTS-GPR enables Bayesian modelling of high-dimensional PESs - a longstanding challenge in computational chemistry.

Distributional treatment effects can be invisible to means: a treatment may preserve average outcomes while changing tails, modes, dispersion, or rare-event probabilities. Kernel tests can detect discrepancies between interventional outcome laws, but global tests do not reveal where the laws differ. We propose DR-ME, to our knowledge the first semiparametrically efficient finite-location test for interpretable distributional treatment effects. DR-ME evaluates an interventional kernel witness at learned outcome locations, returning causal-discrepancy coordinates rather than only a global rejection. From observational data, we derive orthogonal doubly robust kernel features whose centered oracle form is the canonical gradient of this finite witness. For fixed locations, we characterize the local testing limit: DR-ME is chi-square calibrated under the null, has noncentral chi-square local power, and uses the covariance whitening that optimizes local signal-to-noise for discrepancies visible through the selected coordinates. This efficient local-power geometry yields a principled location-learning criterion, with sample splitting preserving post-selection validity. Experiments show near-nominal type-I error, competitive power against global doubly robust kernel tests, and interpretable learned locations that localize distributional effects in a semi-synthetic medical-imaging study.

Online learning from a stream of data is a defining feature of intelligence, yet modern machine learning systems often struggle in this setting, especially under distributional shift. To understand its basic properties, we study the relationship between online and offline learning in the context of kernel regression. We derive a closed-form expression for the function learned by online kernel regression, revealing that online kernel regression is equivalent to offline regression with shifted, inaccurate target outputs. Conversely, we show that by compensating for this effective shift in the teaching signal through target correction, online kernel-based learning can provably learn the same predictor as its offline counterpart. We derive both a closed-form expression for this target correction and an iterative form that can be applied sequentially. Applying this framework to image classification tasks on CIFAR-10 and CORe50, we show that online stochastic gradient descent with iteratively corrected targets outperforms learning with the true targets in continual learning settings. This work therefore provides a basic framework for analyzing and improving online learning in non-stationary environments.

Template tasks have emerged as a clean testbed for asking whether transformers reason with abstract symbols rather than concrete token names. We study the fixed-label classification version of this problem, where train and test examples share latent templates but may use disjoint vocabularies. Unlike next-token prediction, the model need not emit unseen symbols; it must learn a decision rule invariant to symbol renaming. We analyze regularized kernel logistic classification in the transformer-kernel regime. Our main result decomposes the learned predictor into an ideal template-level classifier and a finite-sample perturbation caused by accidental token overlaps in the training data. We encode these overlaps by a colored collision graph and prove high-probability margin-transfer guarantees for fresh-symbol classification. This perspective extends template-based analyses to logistic classification and refines scalar diversity conditions: vocabulary size controls the average rate of collisions, but collision geometry controls whether the ideal classification margin is preserved. More broadly, the same perturbation framework applies to abstraction-augmented inputs, yielding a general margin-versus-collision criterion for identifying when prompting strategies improve fresh-symbol generalization. Synthetic template experiments illustrate the predicted roles of regularization, sample size, and transformer-kernel structure.

Evaluating a new model on an existing benchmark is often necessary to understand its behavior before deployment. For modern evaluation frameworks, generating and evaluating a response for all queries can be prohibitively expensive. In practice, responses from previously-evaluated models are often cached -- creating a potential opportunity to use this additional information to decrease the number of queries required to accurately evaluate a new model. In this paper, we introduce an approach for predicting benchmark performance that leverages cached model responses based on the Data Kernel Perspective Space (DKPS), a method for quantifying the relationship between models in the black-box setting. Theoretically, we show that DKPS-based methods are query-efficient under certain conditions. Empirically, we demonstrate that DKPS-based methods achieve the same mean absolute error as baselines with a substantially decreased query budget. We conclude by proposing an offline method for selecting a set of queries that maximizes the goodness-of-fit on reference models, improving prediction accuracy over random query selection.

We generalize Jan Willems' behavioral approach to a class of discrete-time nonlinear systems in a vector-valued reproducing kernel Hilbert space (RKHS). Apart from linear time-invariant systems, this class covers nonlinear systems modeled by Volterra series and their autoregressive variants, as well as systems admitting Hammerstein-type state-space realizations. We apply the proposed framework to the problem of data-driven modeling of such systems, i.e., when simulation or control objectives for an unknown system are carried out without an explicit system identification step. To that end, we link the behavioral approach to two data-driven modeling methods in a vector-valued RKHS: (1) minimum-norm interpolation and (2) subspace identification.

The Maximum Mean Discrepancy (MMD) is a cornerstone statistic for nonparametric two-sample testing, but its test power is dictated entirely by the chosen kernel. Because any fixed kernel inherently fails to distinguish certain distributions, the kernel must be dynamically optimized. However, data-driven optimization violates the foundational i.i.d. assumption, forcing a strict trade-off in existing frameworks. Ratio criteria ignore this dependence, inducing overfitting and variance collapse on rich kernel classes. Conversely, aggregation methods bypass the dependence using finite grids, but this strategy cannot scale to continuous search spaces like deep kernels. To break this dichotomy, we establish data-driven kernel selection as a model selection problem. We propose Complexity-Penalized MMD (CP-MMD), a criterion derived by applying the two-sample uniform concentration inequality of preceding works to the post-optimization MMD problem. The resulting penalty bounds the empirical MMD by the complexity of the kernel search space, mathematically absorbing the cost of optimization, so that CP-MMD enables direct, grid-free maximization over continuous parametric classes, including scalar bandwidths, polynomial feature bandwidths, and deep network parameters. By formally accounting for optimization complexity, we prove that CP-MMD maximizes true test power while ensuring unconditional Type-I validity. Consequently, CP-MMD enables grid-free kernel selection across linear, polynomial-feature, and deep regimes, matching or exceeding state-of-the-art test power.

Sparse autoencoders (SAEs) have become central to mechanistic interpretability, decomposing transformer activations into monosemantic features. Yet existing analyses characterise features almost exclusively through top-activating token lists or decoder weight vectors, leaving the higher-order co-occurrence structure shared across features largely unexamined. We introduce a graph-structured representation in which each SAE feature is modelled as a token co-occurrence graph: nodes are the tokens most frequent near strong activations, and edges connect pairs that co-occur within local context windows. A custom WL-style, frequency-binned graph kernel then provides a similarity measure over this structural space. Applied as a proof of concept to features from a large SAE trained on GPT-2 Small and probed with a synthetic mixed-domain corpus, our clustering recovers heuristic motif families (punctuation-heavy patterns, language and script clusters, and code-like templates) that are not recovered by clustering on decoder cosine similarity. A token-histogram baseline achieves higher overall purity, so the contribution of the graph view is complementary rather than dominant: it surfaces structural relationships that token-frequency and decoder-weight views alone do not capture. Cluster assignments are stable across graph-construction hyperparameters and random seeds.

Modern datasets across many disciplines increasingly consist of time-evolving, potentially infinite-dimensional random objects, such as dynamic functional data, which are naturally modeled in Hilbert spaces. In these settings, characterizing probability measures, for example, through densities, can be ill-defined or technically challenging. Motivated by clustering applications, we propose a Gaussian mixture framework for Hilbert-space-valued data based on kernel mean embeddings and develop efficient optimization algorithms for estimation. We establish theoretical guarantees showing that the proposed algorithm is well defined and that the model yields a dense class of approximations in infinite-dimensional spaces. We evaluate the framework through extensive experiments on diverse structures and data geometries, including $L^2$-functional data and random graphs in Laplacian spaces arising in modern medical applications.

Existing guarantees for misspecified kernelized bandit optimization pay for misspecification through kernel complexity: in generic offline bounds, the misspecification level $\varepsilon$ is multiplied by $\sqrt{d_\mathrm{eff}}$, where $d_\mathrm{eff}$ is the kernel effective dimension, while in online regret bounds, the corresponding penalty is $\sqrt{γ_n}\,n\varepsilon$, where $γ_n$ is the maximum information gain after $n$ rounds of interaction. In this work, we show that, for a large class of kernels, the misspecification amplification can be reduced to logarithmic or polylogarithmic growth. In the offline setting, we first prove high-probability simple-regret bounds whose misspecification term is governed by a spectral Lebesgue constant. This yields logarithmic amplification for one-dimensional monotone spectra and polylogarithmic amplification for multivariate Fourier-diagonal product kernels. In the online setting, we modify a domain-splitting algorithm and prove a cumulative regret bound of $\widetilde{\mathcal O}(\sqrt{γ_n n}+n\varepsilon)$ under mild localized eigendecay assumptions, removing the extra $\sqrt{γ_n}$ factor from the misspecification term. The common principle is localization: spectral localization controls the Lebesgue constant of the offline approximation operator, while domain splitting implements the spatial analogue of this mechanism in the online setting, preventing local misspecification errors from being amplified globally.

In this paper, we investigate the supremum-norm generalization error and the uniform inference for a specific class of kernel regression methods, namely the kernel gradient flows. Under the widely adopted capacity-source condition framework in the kernel regression literature, we first establish convergence rates for the supremum norm generalization error of both continuous and discrete kernel gradient flows under the source condition $s>α_0$, where $α_0\in(0,1)$ denotes the embedding index of the kernel function. Moreover, we show that these rates match the minimax optimal rates. Building on this result, we then construct simultaneous confidence bands for both continuous and discrete kernel gradient flows. Notably, the widths of the proposed confidence bands are also optimal, in the sense that their shrinkage rates are greater than, while can be arbitrarily close to, the minimax optimal rates.

Kernel quadrature can exploit RKHS spectral structure and outperform Monte Carlo on smooth integrands, but optimized quadrature weights are generally signed and may be numerically unstable. We study whether spectral acceleration remains possible when the weights are constrained to be positive, i.e., simplex weights. In the exact-target fixed-pool setting, an evaluated i.i.d. candidate pool of size $N$ is already available and the task is to reweight it so as to approximate the kernel mean embedding. We show that this positive reweighting problem is governed not by the equal-weight empirical average, but by the random convex hull generated by the pool. Our main geometric result shows that the mean of a bounded $d$-dimensional random vector can be approximated by a convex combination of $N$ i.i.d. samples at accuracy $O(d/N)$ with high probability, sharper than equal-weight averaging in the fixed-dimensional regime. We transfer this $d$-dimensional convex-hull approximation to full RKHS worst-case error through an augmented Mercer-truncation argument. The resulting positive-weight KQ bounds consist of a spectral tail term and a finite-sample convex-hull term, yielding Monte-Carlo-beating rates in favorable spectral regimes, including near-$O(1/N)$ rates up to logarithmic factors under exponential spectral decay. We also provide a constructive Frank--Wolfe algorithm that operates directly on the pool atoms, maintains simplex weights, and admits an explicit optimization-error bound.

We introduce a novel framework for constructing scalable and flexible covariance kernels for Gaussian processes (GPs) by directly learning the covariance structure under a regression-type parameterization induced by Vecchia approximations, using deep neural architectures. Specifically, we model kriging coefficients and conditional standard deviations, deterministic quantities that uniquely characterize the covariance, providing stable and informative learning targets. Exploiting the permutation-equivariant structure of conditioning sets in the Vecchia factorization, we derive a universal representation for permutation-preserving functions and design neural architectures that respect this symmetry, leading to improved training stability and data efficiency. The proposed approach enables expressive, non-stationary kernel learning while maintaining computational scalability, thereby bridging classical GP methodology with modern deep learning.

Multi-Output Gaussian Processes (MOGPs) provide a principled probabilistic framework for modelling correlated outputs but face scalability bottlenecks when applied to datasets with high-dimensional output spaces. To maintain tractability, existing methods typically resort to restrictive assumptions, such as employing low-rank or sum-of-separable kernels, which can limit expressiveness. We propose the Transformed Latent Variable MOGP (T-LVMOGP), a novel framework that scales MOGPs to a massive number of outputs while preserving the capacity to capture meaningful inter-output dependencies. T-LVMOGP constructs a flexible multi-output deep kernel by mapping inputs and output-specific latent variables into an embedding space using a Lipschitz-regularised neural network. Combined with stochastic variational inference, our model effectively scales to high-dimensional output settings. Across diverse benchmarks, including climate modelling with over 10,000 outputs and zero-inflated spatial transcriptomics data, T-LVMOGP outperforms baselines in both predictive accuracy and computational efficiency.

We introduce PALACE (Persistence Adaptive-Landmark Analytic Classification Engine), the data-adaptive companion to PLACE, paying a small cross-validation tier on three knobs (budget, radii, bandwidth; $\leq 5$ choices each). A cover-theoretic core (Lebesgue-number criterion on the landmark cover) yields four closed-form guarantees. (i) A structural lower distortion bound $λ(τ;ν)$ on $\mathcal{D}_n$ under cross-diagram non-interference, with a $(D/L)^2$ budget reduction over the uniform grid when diagrams concentrate. (ii) Equal weights $w_k = K^{-1/2}$ maximizing $λ$, and farthest-point-sampling positions $2$-approximating the optimal $k$-center covering radius; both derived from training labels alone, no gradient training. (iii) A kernel-RKHS classification rate $O((k-1)\sqrt{K}/(γ\sqrt{m_{\min}}))$ with binary necessity threshold $m = Ω(\sqrt K/γ)$ from a matching Le Cam lower bound, and a closed-form filtration-selection rule. The kernel-Mahalanobis margin $\hatρ_{\mathrm{Mah}}$ is the strongest closed-form ranker across the chemical-graph pool (mean Spearman $ρ\approx +0.60$); the isotropic surrogate $\hatγ/\sqrt{K}$ admits a selection-consistency rate, and $\widehatλ$ from (i) provides an independent data-level signal (positive on COX2 and PTC). (iv) A per-prediction certificate, in non-asymptotic Pinelis and asymptotic Gaussian forms, with no calibration split. Empirically, PALACE is the strongest closed-form diagram-based method on Orbit5k ($91.3 \pm 1.0\%$, matching Persformer), leads every diagram-based competitor on COX2 and MUTAG, and is competitive on DHFR (within 1 pp of ECP). At $8\times$ domain inflation, adaptive placement maintains $94\%$ while the uniform grid collapses to chance ($25\%$ on 4-class data).

Training machine learning interatomic potentials (MLIPs) for reactive chemistry is often bottlenecked by the high cost of quantum chemical labels and the scarcity of transition state configurations in candidate pools. Active learning (AL) can mitigate these costs, but its effectiveness hinges on the acquisition rule. We investigate whether the latent space of a pretrained MLIP already contains the information necessary for effective acquisition, eliminating the need for auxiliary uncertainty heads, Bayesian training and fine-tuning, or committee ensembles. We introduce two acquisition signals derived directly from a pretrained MACE potential: a finite-width neural tangent kernel (NTK) and an activation kernel built from hidden latent space features. On reactive-chemistry benchmarks, both kernels consistently outperform fixed-descriptor baselines, committee disagreement, and random acquisition, reducing the data required to reach performance targets by an average of 38% for energy error and 28% for force error. We further show that the pretrained model induces similarity spaces that preserve chemically meaningful structure and provide more reliable residual uncertainty estimates than randomly initialised or fixed-descriptor-based kernels. Our results suggest that pretraining aligns latent-space geometry with model error, yielding a practical and sufficient acquisition signal for reactive MLIP fine-tuning.

We introduce the Yat kernel $k_{b,\varepsilon}(\mathbf{w},\mathbf{x})=\frac{(\mathbf{w}^\top\mathbf{x}+b)^2}{\|\mathbf{x}-\mathbf{w}\|^2+\varepsilon},\qquad b\ge 0,\ \varepsilon>0,$ a rational hidden-unit primitive whose units are Mercer sections over a shared input/weight space. For $b\ge 0$ the kernel is PSD; for $b>0$ it dominates a scaled inverse-multiquadric (IMQ) in the Loewner order, yielding fixed-kernel universality, characteristicness, and strict positive definiteness on every compact domain. The polynomial numerator opens nonradial alignment channels absent from finite IMQ expansions, witnessed by the directional far-field trace $T_\infty g_\varepsilon(\cdot;\mathbf{w},b)(\mathbf{u})=(\mathbf{u}^\top\mathbf{w})^2$. Algebraically, a second finite difference in the bias recovers any IMQ atom from three positive-bias Yat atoms exactly, sharp at three atoms in every dimension at exact pointwise equality. A trained shared-$(b,\varepsilon)$ Yat layer is therefore a finite learned-center expansion in a fixed universal characteristic RKHS, with closed-form norm $\boldsymbolα^\top\mathbf{K}\boldsymbolα$ and explicit diagonal $(\|\mathbf{x}\|^2+b)^2/\varepsilon$ driving a Rademacher generalization bound.

Deep neural networks dominate modern machine learning, while alternative function approximators remain comparatively underexplored at scale. In this work, we revisit kernel methods as drop-in components for standard deep learning pipelines. We introduce \emph{Sparse Kernels} (SKs), a differentiable, localized, and lazy variant of kernel ridge regression (KRR) that defers training to inference time and reduces to the solution of small local systems. We integrate SKs into PyTorch as modular layers that preserve end-to-end trainability, and we show that they expose three distinct sets of parameters -- feature representations, target values, and evaluation points -- each of which can be fixed or learned. This decomposition broadens the design space available to practitioners, enabling, in particular, training-free transfer, nonlinear probing, and hybrid kernel-neural models. Across convolutional networks, vision transformers, and reinforcement learning, SK-based modules serve two complementary roles: in some settings, they match the performance of trained neural readouts with substantially less training; in others, they augment existing models and improve their performance when used as additional components. Our results suggest that kernel methods, once made scalable and differentiable, can be readily integrated with deep learning rather than treated as a separate paradigm.