KG Entity Alignment

While LLMs demonstrate strong capabilities in English Relation Extraction (RE) tasks, a significant gap remains in assessing their RE performance in low-resource languages, due to a lack of standardized benchmarks. Creating native, language-specific annotated RE benchmarks is expensive and requires human expertise, while relying on translation yields suboptimal, inaccurate datasets that introduce English-centric biases. To tackle this, we propose a scalable, language-agnostic methodology to create RE data by denoising naturally occurring yet noisy alignments of knowledge bases and corresponding texts. We define a proper alignment via a Natural Language Inference (NLI) task, where a relation triplet is entailed by an input text. We empirically assess five denoising strategies, and demonstrate that multilingual models outperform language-specific models in the few-shot LLM setting, while Hebrew-specific encoders remain competitive under NLI fine-tuning and are strongest in the label-free cross-training setting. We further find that prompting in the native language achieves performance on par with or slightly exceeding English prompts, confirming that the pipeline operates naturally in the target language. The best open-weights model, Gemma-4-31B-it (F1,=,0.915), matches the best API model, GPT-5.4 (0.921), and reaches F1,=,0.844 on a fully held-out, dual-annotated test set. Applying the optimized pipeline, we release HeRE: a novel, massive, 1.5-million-instance silver dataset for Hebrew RE, designed to support data-intensive experimentation and model fine-tuning. HeRE bridges a critical gap in standard Hebrew RE evaluation, while providing the NLP community with a reproducible, language-agnostic pipeline for RE dataset construction in other low-resource settings.

Entity Alignment (EA) identifies equivalent entities across knowledge graphs and is critical for knowledge base integration and ontology merging. Evaluating EA systems at scale requires expensive expert annotation, making systematic assessment across diverse domains practically infeasible. LLM-as-judge evaluation offers a potentially scalable alternative, yet its reliability for structured prediction tasks like EA remains unstudied. We present the first systematic benchmarking study across three frontier models, three datasets, and four EA systems, using perturbation bias diagnostics, meta-evaluation across all dataset-judge-prompt combinations, and counterfactual label-flip tests. We identify anchor bias, a failure mode in which judges invert discrimination when the system's decision label is visible. Label exposure causally collapses judge discrimination (J-ROC-AUC 0.12-0.87), while a label-free protocol recovers near-ceiling capability on distinctive-name datasets (0.93-1.00) and significant recovery on biomedical pairs (0.93-0.95). Counterfactual experiments confirm causality (FSR 53-99%) and reveal a frontier model paradox: stronger judges exhibit greater label sensitivity, not less. A blinded two-annotator human evaluation (102 pairs, Cohen's kappa=0.902) confirms this mechanism directly. We release the first biomedical EA benchmark (MeSH-SNOMED CT, 15K pairs) and a reproducible auditing framework for LLM judge reliability in EA. Code and data are available at https://github.com/vaibhavalakshmiravideshik/llm-as-a-judge-entity-alignment.

Cyber threat intelligence (CTI) is foundational to modern cyber defense, yet much of it resides in unstructured reports whose volume and heterogeneity far exceed manual analysis, motivating research on automatically constructing knowledge graphs from CTI reports. However, existing approaches mainly extract partial information within a single report, leaving the cross-source setting unexplored, where the same threat is given unrelated names. Our key insight is that attack behaviors, once mapped to MITRE ATT&CK (a standardized catalog of attack techniques), can anchor the rest of a report. Attack behaviors are the adversarial actions a report describes, while contextual entities (e.g., threat actors, campaigns, and affected products) and Indicators of Compromise (IoCs; e.g., IP addresses) are their participants and traces. Attaching them to these anchors places every per-report graph in one canonical space. We realize this insight in BEACON, an LLM-driven framework for cross-source CTI knowledge graph construction. Its first stage extracts each report into a graph under a propose-then-verify paradigm, grounding candidates in report evidence and official ATT&CK definitions, to suppress LLM misclassification and hallucination. Its second stage merges these graphs with a hierarchical alignment strategy that applies signals in decreasing order of determinism, from character-level and semantic similarity to overlapping technique neighborhoods, iterating as merges pool neighborhoods. No existing benchmark links entities to technique anchors or provides cross-source alignment ground truth. We therefore construct and release two human-annotated datasets from 34 sources: to our knowledge the largest for report-level CTI extraction (8,395 elements) and the first for cross-source consolidation (3,487). On them, BEACON outperforms all baselines by at least 23% and 9%, respectively.

This paper proposes DKG-MTI, a dual knowledge graph framework for unified multi-task user intent inference from online travel reviews. Existing approaches often rely on hierarchical pipelines that suffer from error propagation or retrieval methods that ignore structural relationships in domain knowledge. To address these limitations, we introduce an inference-only knowledge augmentation framework that dynamically constructs a User-Specific Intent Knowledge Graph from each review and aligns it with a Global Hotel Knowledge Graph through structure-aware semantic smoothing. The aligned knowledge is combined with the original review and processed by a large language model to simultaneously predict aspect ratings and generate reverse user intent statements. Experiments on TripAdvisor reviews show that DKG-MTI consistently outperforms strong LLM and retrieval-based baselines in both classification and intent generation tasks, demonstrating the effectiveness of structure-aware knowledge alignment for scalable and explainable intent inference.

Modern opaque AI models prize performance over interpretability, which makes testing difficult. However, formal statistical tests conducted on a model's embedding space can provide robust characterizations of semantic structure, concept separation, and knowledge graph alignment. Model developers would benefit from a model comparison technique that leverages human-curated knowledge structures to test alignment. The scale of the input space for even relatively simple tasks motivates the need for alignment checks that augment standard outcome reasoning. This work develops and demonstrates a topology-based multi-modal alignment test to make deployment, selection, and comparison of opaque models more interpretable. These methods also offer an intuitive connection to possibility theory and a unified decision theoretic framework from data to deployment.

Entity alignment (EA) identifies entities across knowledge graphs (KGs) that refer to the same real-world object. Conventional EA methods mainly exploit explicit graph structures and textual fields, which often provide insufficient semantic understanding to recognize the same entity under heterogeneous descriptions and distinguish it from semantically similar entities. Although large language models (LLMs) offer deeper entity understanding, existing LLM-based EA methods largely use this capability for auxiliary generation or candidate-conditioned decisions. Consequently, such understanding is not distilled into a stable and directly comparable identity space, leaving alignment tied to specific KG pairs or candidate sets and requiring repeated processing as the matching context changes. To address these limitations, we propose IRIS (Identity Representations from Internal States), a training-free framework that constructs for each entity an iris-like signature encoding its distinctive and stable identity characteristics. IRIS derives these signatures by eliciting identity-oriented contextual representations from a frozen LLM, thereby forming a shared space in which each entity is encoded once and can be aligned across different KGs through direct similarity comparison, without pair-dependent representation construction or candidate-wise LLM inference. Across four established EA benchmarks and two frozen LLM backbones, the best IRIS variants achieve Hits@1 scores of 100.00, 99.38, 98.31, and 97.99 on D-Y-15K V2, DBP-WIKI, ICEWS-WIKI, and ICEWS-YAGO, respectively.

Knowledge graphs (KGs) are increasingly used as structured context for Large Language Models (LLMs), but industrial KG-RAG systems often need to integrate public and domain-specific KGs constructed from heterogeneous databases. This integration relies on Entity Alignment (EA), where lexical matching alone is insufficient under predicate-name variation and incomplete local neighborhoods. We address EA for KG integration by constructing a pairwise EA dataset and proposing two complementary modules: Predicate Importance Estimation (PIE) and Decoupled Rationale-Score Distillation (DRSD). PIE is a compact embedding-based approach that removes the subject information from each 1-hop triple, encodes the resulting subjectless triples, and aggregates them with learnable predicate-importance weights to build predicate-aware entity embeddings. DRSD trains a distilled small language model (SLM) with pseudo-answers produced by a teacher LLM through distinct prompts. By converting binary EA labels into text-based supervision and decoupling confidence-score estimation from label-consistent rationales, DRSD enables the SLM to learn task-specific reasoning while retaining a less label-biased confidence signal. Experiments show that PIE and DRSD improve EA classification. Moreover, because DRSD decouples confidence-score estimation from the decision, a discrepancy between the two flags an uncertain prediction for human review, thereby enabling a practical discrepancy between automatic acceptance and human-in-the-loop verification.

Entity alignment (EA) aims to identify equivalent entities across heterogeneous knowledge graphs (KGs) and is a key component of knowledge fusion and cross-KG reasoning. The recent EA foundation model demonstrates that alignment knowledge, once pretrained, can be directly applied to diverse previously unseen KG pairs. However, it still underuses structural context in two places: cross-KG interaction is weak during encoding, and final candidate ranking still relies too heavily on coarse similarity. We address these limitations with ContextEA, an enhanced encoder-decoder framework for transferable EA. On the encoder side, we introduce a cross-KG interaction encoder that unifies the two KGs with anchor bridges and performs earlier relation-aware cross-graph propagation. On the decoder side, we introduce a structural calibration decoder that calibrates alignment scores with entity-level, neighborhood-level, relation-level, and anchor-aware structural evidence. This design strengthens both structural context construction and structural context exploitation while remaining lightweight. Experiments on 29 EA datasets in OpenEA, SRPRS, and DBP show consistent gains over strong transferable baselines. Notably, the pretrained ContextEA already surpasses the finetuned baselines on all three benchmark groups, demonstrating substantially stronger transfer to unseen KGs. These results suggest that explicitly harnessing structural context is an effective direction for improving EA foundation models.

Entity Alignment (EA) is essential for knowledge graph (KG) fusion, but existing benchmarks often allow models to exploit name overlap rather than relational structure. This makes it difficult to evaluate whether models can reject same-name entities that refer to different real-world objects. Our primary contribution is a same-name hard-negative augmentation strategy that simultaneously yields quality-controlled evaluation benchmarks (DW-HN29K, DY-HN27K) and augmented training corpora (DW-Train, DY-Train), by mining same-name but distinct entity pairs from KG name-collision groups. We further introduce HELEA, a two-stage framework integrating (i) entity encoder retrieval trained on hard-negative-augmented training corpora with 1-hop KG context, and (ii) LLM-based reranking without additional training. Experiments show that name-dependent baselines collapse to near-random performance on our hard-negative benchmarks, while HELEA achieves F1 0.967 on DW-HN29K while maintaining Hit@1 0.993 on standard DW-15K.

Cross-domain knowledge alignment is essential for integrating heterogeneous medical systems, yet existing approaches typically treat entity alignment as a static matching problem, ignoring query context and cross-system asymmetry. This limitation is particularly critical in integrative medical settings, where correspondence between concepts is inherently context-dependent, non-bijective, and direction-sensitive. In this paper, we propose Query-Conditioned Entity Alignment (QCEA), which reformulates entity alignment as a query-conditioned correspondence problem. Instead of learning a fixed mapping between entity representations, QCEA treats the textual description of a source entity as a query and ranks candidate entities in the target graph, enabling context-dependent alignment. The framework integrates semantic encoding, graph-based representation learning, and a direction-aware transformation module to capture asymmetric and many-to-many correspondence across heterogeneous knowledge systems. We evaluate QCEA on TCM--WM knowledge graphs derived from SymMap, covering both symptom alignment and herb--molecule alignment tasks. Experimental results show consistent improvements over representative baselines, particularly on rank-sensitive metrics such as Hit@K and MRR. Furthermore, downstream retrieval-augmented generation (RAG) experiments demonstrate that improved alignment leads to better evidence retrieval, stronger grounding, and higher answer accuracy. These findings highlight that alignment is not merely a data integration step, but a key factor that shapes knowledge accessibility and reliability in cross-system medical reasoning.

Entity alignment (EA) is critical for knowledge graph (KG) fusion. Existing EA models lack transferability and are incapable of aligning unseen KGs without retraining. While using graph foundation models (GFMs) offer a solution, we find that directly adapting GFMs to EA remains largely ineffective. This stems from a critical "reasoning horizon gap": unlike link prediction in GFMs, EA necessitates capturing long-range dependencies across sparse and heterogeneous KG structuresTo address this challenge, we propose a EA foundation model driven by a parallel encoding strategy. We utilize seed EA pairs as local anchors to guide the information flow, initializing and encoding two parallel streams simultaneously. This facilitates anchor-conditioned message passing and significantly shortens the inference trajectory by leveraging local structural proximity instead of global search. Additionally, we incorporate a merged relation graph to model global dependencies and a learnable interaction module for precise matching. Extensive experiments verify the effectiveness of our framework, highlighting its strong generalizability to unseen KGs.