RAG Security

Retrieval-augmented generation and tool-integrated LLM agents increasingly depend on external textual sources. This reliance broadens the available attack surface, allowing adversaries to insert malicious instructions that trigger unintended model behaviors. Current defensive measures often utilize LLM-based detectors to filter such content, but these approaches remain vulnerable to optimization-based attacks. Additionally, training-based methods frequently fail to generalize to novel data distributions. To resolve these issues, we introduce SONAR, a prompt sanitization framework that identifies and removes injected content using metrics from natural language inference. Specifically, SONAR constructs a sentence-level relational graph across the user query and external data. By using entailment and contradiction scores as edge weights, the system identifies sentences that deviate from the core task. It then employs connectivity-driven pruning to eliminate flagged injection seeds and their related neighbors while maintaining benign context. Rigorous evaluations across several models and datasets show that SONAR reduces the attack success rate to nearly zero, significantly outperforming nine established baseline defenses.

Background: Patient-facing medical chatbots based on retrieval-augmented generation (RAG) are increasingly promoted to deliver accessible, grounded health information. AI-assisted development lowers the barrier to building them, but they still demand rigorous security, privacy, and governance controls. Objective: To report an anonymized, non-destructive security assessment of a publicly accessible patient-facing medical RAG chatbot and identify governance lessons for safe deployment of generative AI in health. Methods: We used a two-stage strategy. First, Claude Opus 4.6 supported exploratory prompt-based testing and structured vulnerability hypotheses. Second, candidate findings were manually verified using Chrome Developer Tools, inspecting browser-visible network traffic, payloads, API schemas, configuration objects, and stored interaction data. Results: The LLM-assisted phase identified a critical vulnerability: sensitive system and RAG configuration appeared exposed through client-server communication rather than restricted server-side. Manual verification confirmed that ordinary browser inspection allowed collection of the system prompt, model and embedding configuration, retrieval parameters, backend endpoints, API schema, document and chunk metadata, knowledge-base content, and the 1,000 most recent patient-chatbot conversations. The deployment also contradicted its privacy assurances: full conversation records, including health-related queries, were retrievable without authentication. Conclusions: Serious privacy and security failures in patient-facing RAG chatbots can be identified with standard browser tools, without specialist skills or authentication; independent review should be a prerequisite for deployment. Commercial LLMs accelerated this assessment, including under a false developer persona; assistance available to auditors is equally available to adversaries.

Retrieval-Augmented Generation (RAG) equips large language models (LLMs) with external evidence by retrieving documents at inference time, but it also turns the retrieval corpusinto a sensitive asset. Under a black-box setting, an adversary given a candidate document can infer whether it has been ingested into the RAG knowledge base (i.e., document-level membership inference) solely from query response interactions, thereby leaking corpus coverage and the existence of sensitive topics. Existing RAG MIA methods either rely on soft signals such as semantic similarity, which often yield overlapping member/non-member score distributions and unstable thresholds, or employ explicit confirmation probes whose intent is conspicuous and thus prone to refusal and detection. We propose E-MIA, which converts verifiable hard evidence in the target document (e.g., fine-grained details, proper nouns/technical terms, definitional statements, metadata cues, and causal/constraint relations) into an exam with four objectively gradable question types (FB/SC/MC/T/F), and uses the aggregated exam score across multiple evidence targeted questions as the membership signal. Experiments across multiple datasets and diverse RAG configurations demonstrate that E-MIA improves member/non-member separability in stringent settings while preserving natural, stealthy queries, and we further analyze the impact of question composition and exam length on attack effectiveness.

Retrieval-augmented generation (RAG) is vulnerable to prompt injection attacks, in which an adversary inserts malicious documents containing carefully crafted injected prompts into the knowledge database. When a user issues a question targeted by the attack, the RAG system may retrieve these malicious documents, whose injected prompts mislead it into generating attacker-specified answers, thereby compromising the integrity of the RAG system. In this work, we propose CleanBase, a method to detect malicious documents within a knowledge database. Our key insight is that malicious documents crafted for the same attack-targeted questions often exhibit high semantic similarity, as attackers deliberately make them consistent to improve attack success rates. Accordingly, CleanBase constructs a similarity graph over the knowledge database, where each node represents a document and an edge connects two nodes if their semantic similarity--computed using an embedding model--exceeds a statistically determined threshold. Due to their inherent similarity, malicious documents tend to form cliques within this graph. CleanBase detects such cliques and flags the corresponding documents as malicious. We theoretically derive upper bounds on CleanBase's false positive and false negative rates and empirically validate its effectiveness. Experimental results across multiple datasets and prompt injection attacks demonstrate that CleanBase accurately detects malicious documents and effectively safeguards RAG systems. Our source code is available at https://github.com/WeifeiJin/CleanBase.

Security Operations Centers (SOCs) face mounting operational challenges. These challenges come from increasing threat volumes, heterogeneous SIEM platforms, and time-consuming manual triage workflows. We present an end-to-end threat management framework that integrates ensemble-based detection, syntax-constrained query generation, and retrieval-augmented resolution support to automate critical security workflows. Our detection module evaluates both traditional machine learning classifiers and large language models (LLMs), then combines the three best-performing LLMs to create an ensemble model, achieving 82.8% accuracy while maintaining 0.120 false positive rate on SIEM logs. We introduce the SQM (Syntax Query Metadata) architecture for automated evidence collection. It uses platform-specific syntax constraints, metadata-based retrieval, and documentation-grounded prompting to generate executable queries for IBM QRadar and Google SecOps. SQM achieves a BLEU score of 0.384 and a ROUGE-L score of 0.731. These results are more than twice as good as the baseline LLM performance. For incident resolution and recommendation generation, we demonstrate that integrating SQM-derived evidence improves resolution code prediction accuracy from 78.3% to 90.0%, with an overall recommendation quality score of 8.70. In production SOC environments, our framework reduces average incident triage time from hours to under 10 minutes. This work demonstrates that domain-constrained LLM architectures with retrieval augmentation can meet the strict reliability and efficiency requirements of operational security environments at scale.

Retrieval-augmented generation (RAG) systems are increasingly deployed in sensitive domains such as healthcare and law, where they rely on private, domain-specific knowledge. This capability introduces significant security risks, including membership inference, data poisoning, and unintended content leakage. A straightforward mitigation is to enable all relevant defenses simultaneously, but doing so incurs a substantial utility cost. In our experiments, an always-on defense stack reduces contextual recall by more than 40%, indicating that retrieval degradation is the primary failure mode. To mitigate this trade-off in RAG systems, we propose the Sentinel-Strategist architecture, a context-aware framework for risk analysis and defense selection. A Sentinel detects anomalous retrieval behavior, after which a Strategist selectively deploys only the defenses warranted by the query context. Evaluated across three benchmark datasets and five orchestration models, ADO is shown to eliminate MBA-style membership inference leakage while substantially recovering retrieval utility relative to a fully static defense stack, approaching undefended baseline levels. Under data poisoning, the strongest ADO variants reduce attack success to near zero while restoring contextual recall to more than 75% of the undefended baseline, although robustness remains sensitive to model choice. Overall, these findings show that adaptive, query-aware defense can substantially reduce the security-utility trade-off in RAG systems.

Existing jamming attacks on Retrieval-Augmented Generation (RAG) systems typically induce explicit refusals or denial-of-service behaviors, which are conspicuous and easy to detect. In this work, we formalize a subtler availability threat, termed soft failure, which degrades system utility by inducing fluent and coherent yet non-informative responses rather than overt failures. We propose Deceptive Evolutionary Jamming Attack (DEJA), an automated black-box attack framework that generates adversarial documents to trigger such soft failures by exploiting safety-aligned behaviors of large language models. DEJA employs an evolutionary optimization process guided by a fine-grained Answer Utility Score (AUS), computed via an LLM-based evaluator, to systematically degrade the certainty of answers while maintaining high retrieval success. Extensive experiments across multiple RAG configurations and benchmark datasets show that DEJA consistently drives responses toward low-utility soft failures, achieving SASR above 79% while keeping hard-failure rates below 15%, significantly outperforming prior attacks. The resulting adversarial documents exhibit high stealth, evading perplexity-based detection and resisting query paraphrasing, and transfer across model families to proprietary systems without retargeting.

Despite the considerable promise of Retrieval-Augmented Generation (RAG), many real-world use cases may create privacy concerns, where the purported utility of RAG-enabled insights comes at the risk of exposing private information to either the LLM or the end user requesting the response. As a potential mitigation, using anonymization techniques to remove personally identifiable information (PII) and other sensitive markers in the underlying data represents a practical and sensible course of action for RAG administrators. Despite a wealth of literature on the topic, no works consider the placement of anonymization along the RAG pipeline, i.e., asking the question, where should anonymization happen? In this case study, we systematically and empirically measure the impact of anonymization at two important points along the RAG pipeline: the dataset and generated answer. We show that differences in privacy-utility trade-offs can be observed depending on where anonymization took place, demonstrating the significance of privacy risk mitigation placement in RAG.

Retrieval-augmented generation (RAG) improves large language models (LLMs) with external knowledge, but this access path creates security risks distinct from inherent prompt-only or parametric-model flaws. We frame secure RAG as securing external knowledge access. We conducted a systematic search and curated 135 works on attacks, defenses, and security evaluation, and organized them with SLOT: a taxonomy along the attack Surface (S) and the corresponding defense Layer (L), with cross-cutting axes Objective (O) and attack-target scope (T). Mapping these studies onto an external knowledge-access pipeline, we expose three mismatches: target mismatch (T2 attacks outpace T2 defenses and evaluation), stage mismatch (S1 attacks outnumber L1 defenses), and signal mismatch (fluent, retrievable, corpus-fitting S1 attacks challenge anomaly-based L2/L3 defenses). Finally, we discuss directions for more realistic targets, surface-complete defense stacks, standardized evaluation, confidentiality, and multimodal and agentic systems, and release the screening process, selected-paper metadata, and machine-readable SLOT labels at https://github.com/TreeAI-Lab/Awesome-RAG-Security.

When answering user queries, LLMs often retrieve knowledge from external sources stored in retrieval-augmented generation (RAG) databases. These are often populated from unvetted sources, e.g. the open web, and can contain maliciously crafted data. This paper studies attacks that can manipulate the context retrieved by LLMs from such RAG databases. Prior work on such context manipulation primarily injects false or toxic content, which can often be detected by fact-checking or linguistic analysis. A more subtle threat, which we call epistemic bias injection (EBI), is where adversaries inject factually correct yet epistemically biased passages that systematically favor one side of an open-ended issue. Although linguistically coherent and truthful, such adversarial passages effectively crowd out alternative viewpoints during retrieval from the RAG and push LLM outputs towards an attack-desired stance. As a core contribution, we propose a novel characterization of the problem: We give a geometric metric that quantifies stance polarity and epistemic bias. This metric can be computed directly on embeddings of text passages. Leveraging it, we construct EBI attacks and develop a lightweight prototype defense called BiasDef for them. We evaluate them both on a comprehensive benchmark constructed from public question answering datasets. Our results show that: (1) the proposed attack induces significant stance polarity shifts, effectively evading existing retrieval-based sanitization defenses, and (2) BiasDef substantially reduces adversarial retrieval and epistemic bias in LLM's answers. Overall, this demonstrates the new threat as well as the ease of employing epistemic bias metrics for filtering in RAG-enabled LLMs.

Existing data poisoning attacks on retrieval-augmented generation (RAG) systems scale poorly because they require costly optimization of poisoned documents for each target phrase. We introduce Eyes-on-Me, a modular attack that decomposes an adversarial document into reusable Attention Attractors and Focus Regions. Attractors are optimized to direct attention to the Focus Region. Attackers can then insert semantic baits for the retriever or malicious instructions for the generator, adapting to new targets at near zero cost. This is achieved by steering a small subset of attention heads that we empirically identify as strongly correlated with attack success. Across 18 end-to-end RAG settings (3 datasets $\times$ 2 retrievers $\times$ 3 generators), Eyes-on-Me raises average attack success rates from 21.9 to 57.8 (+35.9 points, 2.6$\times$ over prior work). A single optimized attractor transfers to unseen black box retrievers and generators without retraining. Our findings establish a scalable paradigm for RAG data poisoning and show that modular, reusable components pose a practical threat to modern AI systems. They also contribute to interpretability research by revealing a strong link between attention concentration and model outputs.

Retrieval-Augmented Generation (RAG) systems are increasingly deployed in high-stakes domains, where safety depends not only on how a system answers, but also on whether a query should be answered given a knowledge base (KB). Out-of-domain (OOD) queries can cause dense retrieval to surface weakly related context and lead the generator to produce fluent but unjustified responses. We study lightweight, KB-aligned OOD detection as an always-on gate for RAG systems. Our approach applies PCA to KB embeddings and scores queries in a compact subspace selected either by explained-variance retention (EVR) or by a separability-driven t-test ranking. We evaluate geometric semantic-search rules and lightweight classifiers across 16 domains, including high-stakes COVID-19 and Substance Use KBs, and stress-test robustness using both LLM-generated attacks and an in-the-wild 4chan attack. We find that low-dimensional detectors achieve competitive OOD performance while being faster, cheaper, and more interpretable than prompted LLM-based judges. Finally, human and LLM-based evaluations show that OOD queries primarily degrade the relevance of RAG outputs, showing the need for efficient external OOD detection to maintain safe, in-scope behavior.

Retrieval-Augmented Generation (RAG) is a promising technique for applying LLMs to proprietary domains. However, retrieved documents may contain sensitive knowledge, posing risks of privacy leakage in generative results. Thus, effectively erasing private information from retrieved documents is a key challenge for RAG. Unlike traditional text anonymization, RAG should consider: (1) the inherent multi-document reasoning may face de-anonymization attacks; (2) private knowledge varies by scenarios, so users should be allowed to customize which information to erase; (3) preserving sufficient publicly available knowledge for generation tasks. This paper introduces the privacy erasure task for RAG and proposes Eraser4RAG, a private knowledge eraser which effectively removes user-defined private knowledge from documents while preserving sufficient public knowledge for generation. Specifically, we first construct a global knowledge graph to identify potential knowledge across documents, aiming to defend against de-anonymization attacks. Then we randomly split it into private and public sub-graphs, and fine-tune Flan-T5 to rewrite the retrieved documents excluding private triples. Finally, PPO algorithm optimizes the rewriting model to minimize private triples and maximize public triples retention. Experiments on four QA datasets demonstrate that Eraser4RAG achieves superior erase performance than GPT-4o.

Retrieval-Augmented Generation (RAG) enhances Large Language Models (LLMs) by retrieving relevant information from external knowledge bases to provide more accurate, contextually informed, and up-to-date responses. However, this reliance on external knowledge introduces significant security vulnerabilities, as many RAG systems (e.g., Google Search) rely on large and unsanitized data repositories (e.g., Reddit). In this paper, we unveil a novel threat in which attackers steer the RAG system's response by injecting malicious passages into its knowledge base. When a user's query contains attacker-specified trigger words, the RAG retrieves and refers to these malicious passages, enabling the attacker to steer the response without altering the user input or modifying the RAG weights. BadRAG operates in two phases: (i) malicious passages are optimized to be retrieved exclusively when trigger words appear in user queries; (ii) these passages are meticulously crafted to achieve adversarial generation objectives, including denial of service, sentiment manipulation, context leakage, and tool misuse. Our experiments show that injecting just 10 malicious passages (0.04% of the external corpora) achieves a 98.2% retrieval success rate and increases negative response rates from 0.22% to 72% for queries containing triggers.