Random Forest

The evaluation of machine learning models typically relies mainly on performance metrics based on loss functions, which risk to overlook changes in performance in relevant subgroups. Auditing tools such as SliceFinder and SliceLine were proposed to detect such groups, but usually have conceptual disadvantages, such as the inability to directly address continuous covariates. In this paper, we introduce FairTree, a novel algorithm adapted from psychometric invariance testing. Unlike SliceFinder and related algorithms, FairTree directly handles continuous, categorical, and ordinal features without discretization. It further decomposes performance disparities into systematic bias and variance, allowing a categorization of changes in algorithm performance. We propose and evaluate two variations of the algorithm: a permutation-based approach, which is conceptually closer to SliceFinder, and a fluctuation test. Through simulation studies that include a direct comparison with SliceLine, we demonstrate that both approaches have a satisfactory rate of false-positive results, but that the fluctuation approach has relatively higher power. We further illustrate the method on the UCI Adult Census dataset. The proposed algorithms provide a flexible framework for the statistical evaluation of the performance and aspects of fairness of machine learning models in a wide range of applications even in relatively small data.

Covering one third of Earth's land surface, forests are vital to global biodiversity, climate regulation, and human well-being. In Europe, forests and woodlands reach approximately 40% of land area, and the forestry sector is central to achieving the EU's climate neutrality and biodiversity goals; these emphasize sustainable forest management, increased use of long-lived wood products, and resilient forest ecosystems. To meet these goals and properly address their inherent challenges, current practices require further innovation. This chapter introduces DigiForest, a novel, large-scale precision forestry approach leveraging digital technologies and autonomous robotics. DigiForest is structured around four main components: (1) autonomous, heterogeneous mobile robots (aerial, legged, and marsupial) for tree-level data collection; (2) automated extraction of tree traits to build forest inventories; (3) a Decision Support System (DSS) for forecasting forest growth and supporting decision-making; and (4) low-impact selective logging using purpose-built autonomous harvesters. These technologies have been extensively validated in real-world conditions in several locations, including forests in Finland, the UK, and Switzerland.

Assessing the importance of individual features in Machine Learning is critical to understand the model's decision-making process. While numerous methods exist, the lack of a definitive ground truth for comparison highlights the need for alternative, well-founded measures. This paper introduces a novel post-hoc local feature importance method called Counterfactual Importance Distribution (CID). We generate two sets of positive and negative counterfactuals, model their distributions using Kernel Density Estimation, and rank features based on a distributional dissimilarity measure. This measure, grounded in a rigorous mathematical framework, satisfies key properties required to function as a valid metric. We showcase the effectiveness of our method by comparing with well-established local feature importance explainers. Our method not only offers complementary perspectives to existing approaches, but also improves performance on faithfulness metrics (both for comprehensiveness and sufficiency), resulting in more faithful explanations of the system. These results highlight its potential as a valuable tool for model analysis. Link to repository: https://github.com/EddieConti/CID

Many high-stakes screening tasks require predicting rare outcomes from unstructured text, where errors are costly and decisions must be auditable. We introduce Random Rule Forest (RRF), an interpretable ensemble that uses a large language model (LLM) not as an end-to-end predictor but as a generator of simple YES/NO questions. Each question acts as a weak learner, and their responses are combined by a plain unit-weight vote into an auditable ``green-flags'' scorecard: enough independent positive signals indicate a higher chance of success. We argue this deliberate simplicity is a robust default when positives are scarce and learned weights are hard to estimate. We evaluate RRF in two low-base-rate domains. On early-stage startup screening from founder profiles, RRF produces a transparent scorecard whose precision is several times the base rate (with light expert input raising it further) and, unlike direct prompting, its operating point can be controlled directly. On an established Phase~I clinical-trial benchmark, RRF outperforms published baselines on the threshold-independent metrics PR-AUC and ROC-AUC. Together these show that LLMs can serve as auditable feature generators for high-stakes text-based decisions, combining transparency with competitive predictive performance.

Semi-supervised anomaly detection is based on the principle that any record that looks different from normal training data is a potential anomaly. However, in some cases we are specifically interested in anomalies that correspond to high attribute values (or low, but not both). For distance-based methods, we propose an asymmetrical distance measure that takes this monotonicity into account by incorporating the ramp function. For the Isolation Forest algorithm, we propose a modified path length algorithm. Through experiments on synthetic and real-life datasets, we show that these proposals increase anomaly detection performance on datasets with monotonic attributes.

Building trustworthy machine learning algorithms for biological applications requires adapting to data heterogeneity from different sources, batches, distributions, or studies. We propose the 'Cross-Cluster Weighted Forest' (CCWF), an ensembling approach that explicitly leverages heterogeneity in the feature distribution to produce more accurate and more generalizable predictors than the standard Random Forest in cases when data can be naturally clustered. CCWF generalizes the RF architecture to an outer unsupervised layer, supervised subtasks, and ensembling. Specifically it involves unsupervised clustering of the training data, fitting a Random Forest on each cluster, and combining the forests via stacked regression weights that reward cross-cluster generalizability. We provide a theoretical analysis of an analytically tractable forest model showing that cluster-based ensembling is asymptotically more accurate than training a single forest on the full data, with the gain driven by bias reduction. In simulations, we find that CCWF is robust across data-generating regimes and outcome models; furthermore, we explore the influence of data partitioning and ensemble weighting strategies on the benefits of our method. Finally, we apply our approach to cancer molecular profiling and gene expression datasets that are naturally divisible into clusters; in both simulations and real data examples, we illustrate that our approach outperforms classic Random Forest by margins of 30-40%, aligning with our theoretical results. Overall, we show that CCWF provides a statistically grounded prediction algorithm for data spanning multiple domains or sub-populations, a structure common in biological applications.