Developing algorithms for real-life problems that perform well in practice depends on the availability of realistic data for testing. Obtaining real-life data for optimization problems in health care, however, is often difficult, and such data typically cannot be published, which limits reproducibility by other researchers. This is especially true for patient-related problems because of data privacy policies such as the patient-to-room assignment problem. Therefore, artificially generated instances are commonly used. To improve the generation of realistic instances, we develop a configurable instance generator for the patient-to-room assignment problem and other patient-related problems, featuring an easy-to-use graphical user interface. The design of the generator is based on an extensive empirical analysis of real hospital data, which identifies relevant ward-specific patterns such as patients' age and length-of-stay distributions. Moreover, as randomly generated instances are often infeasible, we address this issue in two ways. We implement a dynamic programming approach in the generator to optionally enforce feasibility and extend existing results from the literature to derive new combinatorial insights into patient-to-room feasibility.
Individual level daily activity schedules are essential for a wide range of applications, including infectious disease control, urban transportation planning, and policy design. In practice, such schedules are typically generated by combining population data with travel survey data. These data sources are used because they are often publicly available, whereas observed individual activity schedules are difficult to obtain due to privacy concerns. However, because of the complexity of mobility modelling, it is difficult to generate realistic activity schedules that also preserve travel times consistent with those reported in travel surveys. To address this issue, we propose a framework for generating activity schedules that iteratively applies a dynamic programming method to allocate activity locations based on simulated travel times. Numerical experiments with dummy data show that the proposed method reduces the discrepancy between simulated travel times and those reported in travel surveys by 52.2% relative to the first iteration through iterative refinement.
Generative modeling of longitudinal Electronic Health Records is increasingly important for privacy-preserving research, yet standard autoregressive models tend to underrepresent the co-occurrence structure of tail events (i.e., diseases, symptoms), reducing the fidelity and faithfulness of generated data for rare subpopulations. To this end, we propose AdaPCLA framework, which enables generative models to adaptively fit and generate EHR data through a data distribution-aware training strategy; this is achieved by internalizing data knowledge parameters by simulated annealing training. It also supports training-free adaptation to a diverse clinical population for generation through zero-shot distribution control. Moreover, our theoretical analysis characterizes rare-code logit updates through the label-wise empirical NTK and derives a prior-internalization bound for how annealing speed and NTK conditioning affect retained prior signals. Experiments on real-world data show that AdaPCLA achieves consistent gains in tail plausibility, downstream utility, and zero-shot control; in particular, it improves TailPairSeen over HALO by 114.2% on MIMIC-III and 65.1% on MIMIC-IV, outperforms GPT-style generation by 3.5% F1 for zero-shot cross-population adaptation.
Data scarcity is a major bottleneck in medical Multiple Instance Learning (MIL), especially for rare diseases or expensive modalities. We introduce a statistically grounded patient augmentation approach that generates realistic patients directly in embedding space. Using Gaussian Mixture Models as a probabilistic clustering approach on pooled instance embeddings from all patients, our method learns disease-specific "recipes"-statistical distributions of instances across unsupervised clusters. New patients are then generated by sampling embeddings from clusters based on learned recipes. Unlike existing methods that require examples from all categories, our method can generate patients offline by re-mixing pooled embeddings. Generated patients are further selected based on uncertainty quantification to improve MIL performance. We evaluate our method across three clinically relevant scarcity scenarios: (i) cross-dataset transfer, where an entirely missing "healthy" class is generated using statistics from an external cohort; (ii) low-data regimes, where class sizes are extremely limited; and (iii) small-cohort non-image tasks, including single-cell RNA-seq and flow cytometry. Across all experiments, our method improves performance over baseline, often outperforming other bag-mixing strategies. Notably, in the missing-class scenario, a performance comparable to full-dataset training is achieved, demonstrating its potential for rare disease diagnostic and privacy-preserving patient augmentation. The code is available at https://github.com/marrlab/RECIPE
Muhammed Furkan Dasdelen, Fatih Ozlugedik, Anastasia Litinetskaya +3