ROIX-Comp: Optimizing X-ray Computed Tomography Imaging Strategy for Data Reduction and Reconstruction
Organizations: RIKEN (R-CCS), Kobe, Hyogo, Japan · The University of Electro-Communications, RIKEN (R-CCS), Tokyo, Japan · Japan Synchrotron Radiation Research Institute, Sayo, Hyogo, Japan · RIKEN SPring-8 Center, Hyogo, Japan ·
Abstract
In high-performance computing (HPC) environments, particularly in synchrotron radiation facilities, vast amounts of X-ray images are generated. Processing large-scale X-ray Computed Tomography (X-CT) datasets presents significant computational and storage challenges due to their high dimensionality and data volume. Traditional approaches often require extensive storage capacity and high transmission bandwidth, limiting real-time processing capabilities and workflow efficiency. To address these constraints, we introduce a region-of-interest (ROI)-driven extraction framework (ROIX-Comp) that intelligently compresses X-CT data by identifying and retaining only essential features. Our work reduces data volume while preserving critical information for downstream processing tasks. At pre-processing stage, we utilize error-bounded quantization to reduce the amount of data to be processed and therefore improve computational efficiencies. At the compression stage, our methodology combines object extraction with multiple state-of-the-art lossless and lossy compressors, resulting in significantly improved compression ratios. We evaluated this framework against seven X-CT datasets and observed a relative compression ratio improvement of 12.34x compared to the standard compression.
Figures & tables
| Dataset name | Resolution | Number of images | Total Size (GB) |
|---|---|---|---|
| Wood ( SPring-8 Research Facility, 2022a ) | 740x300 | 900 | 0.4 |
| Fossil embryos of cnidarians ( SPring-8 Research Facility, 2022b ) | 4090x3008 | 1804 | 42 |
| Ryugu ( SPring-8 Research Facility, 2023 ) | 1207x659 | 903 | 1.4 |
| Chicken ( Meaney, 2022 ) | 2240x2368 | 721 | 3.83 |
| Walnut ( Meaney, 2022 ) | 2240x2368 | 721 | 7.66 |
| Pine cone ( Meaney, 2022 ) | 2240x2368 | 721 | 7.66 |
| Dataset | Method | Error Bound | ||||
|---|---|---|---|---|---|---|
| 1e-1 | 1e0 | 5e0 | 1e1 | 1.5e1 | ||
| Wood | ROIX-Gzip | 6.53 | 6.60 | 10.07 | 17.46 | 27.01 |
| ROIX-Zstd | 6.35 | 6.36 | 9.10 | 18.29 | 29.47 | |
| ROIX-Sz3 | 4.40 | 8.05 | 17.22 | 25.02 | 39.56 | |
| ROIX-Zfp | 1.03 | 2.92 | 3.57 | 4.03 | 4.03 | |
| Fossil | ROIX-Gzip | 4.71 | 4.85 | 10.04 | 39.90 | 80.34 |
Computed Tomography
Computed tomography uses X-ray measurements from multiple angles to reconstruct cross-sectional and volumetric images for diagnosis and scientific imaging.
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