The Dresden Dataset for 4D Reconstruction of Non-Rigid Abdominal Surgical Scenes
Authors: Reuben Docea, Rayan Younis, Yonghao Long, Maxime Fleury, Jinjing Xu, Chenyang Li, André Schulze, Ann Wierick, Johannes Bender, Micha Pfeiffer, Qi Dou, Martin Wagner, Stefanie Speidel
Organizations: Department of Translational Surgical Oncology, National Center for Tumor Diseases (NCT), NCT/UCC Dresden, a partnership between DKFZ, Faculty of Medicine and University Hospital Carl Gustav Carus, TUD Dresden University of Technology, and Helmholtz-Zentrum Dresden-Rossendorf (HZDR), Dresden, Germany · Department of Translational Surgical Oncology, NCT/UCC Dresden, Faculty of Medicine and University Hospital Carl Gustav Carus, TUD Dresden University of Technology, Fetscherstraße 74, 01307 Dresden, Germany · Department for Visceral, Thoracic and Vascular Surgery, Faculty of Medicine and University Hospital Carl Gustav Carus, Technische Universität Dresden, Dresden, Germany · Centre for Tactile Internet with Human-in-the-Loop (CeTI), Technical University Dresden, Dresden, Germany · Department of Computer Science and Engineering, The Chinese University of Hong Kong, Hong Kong, China
The D4D Dataset provides paired endoscopic video and high-quality structured-light geometry for evaluating 3D reconstruction of deforming abdominal soft tissue in realistic surgical conditions. Data were acquired from six porcine cadaver sessions using a da Vinci Xi stereo endoscope and a Zivid structured-light camera, registered via optical tracking and manually curated iterative alignment methods. Three sequence types - whole deformations, incremental deformations, and moved-camera clips - probe algorithm robustness to non-rigid motion, deformation magnitude, and out-of-view updates. Each clip provides rectified stereo images, per-frame instrument masks, stereo depth, start/end structured-light point clouds, curated camera poses and camera intrinsics. In postprocessing, ICP and semi-automatic registration techniques are used to register data, and instrument masks are created. The dataset enables quantitative geometric evaluation in both visible and occluded regions, alongside photometric view-synthesis baselines. Comprising over 300,000 frames and 369 point clouds across 98 curated recordings, this resource can serve as a comprehensive benchmark for developing and evaluating non-rigid SLAM, 4D reconstruction, and depth estimation methods.
Figures & tables
Figure 1: Experimental setup showing porcine cadaver in supine position for open surgery with da Vinci . The Zivid structured light camera is visible in the foreground, with optical markers attached to the boom supporting the Zivid and the endoscope.
Figure 2: Sequence Alignment Tool used for creating clips.json files: manually identifying start and end points of clips, and associating them with specific point cloud data.
Figure 3: Point cloud acquired with the SLC rendered from the perspective of the Zivid camera (left) and the endoscope camera after PnP-RANSAC (right).
Figure 4: Visualization of alignment with feature matching (LightGlue).
Figure 5: Comparison between rendered, aligned, and anaglyph images for nominal (left) and PnP-RANSAC adjusted (right) poses.
Figure 6: Example of the semi-automatic region-based ICP refinement used when standard ICP failed to produce a reliable alignment.
Figure 7: Comparison of pose quality across the Nominal, Curated, and ICP sets. The box plots summarize the distribution of nearest–neighbour distances between points in the Stereo Depth point cloud and their closest corresponding points in the SLC point cloud, illustrating the relative accuracy of the poses used in each set.
Figure 8: Overview of visual data associated with Clip 1 and the subsequent four clips for sequence 2025_09_09-15_40_48 of Specimen 5 . For each clip (from top to bottom: the initial state of Clip 1 followed by the end states of the next four clips), the figure displays: the left endoscopic image, the RGB rendering produced from the SLC point cloud using the curated pose, the stereo depth map, and the SLC point-cloud depth image generated from the same curated pose. This layout illustrates the visual consistency and depth alignment achieved through the curated registration process.
Figure 9: Recording 2025_09_09-15_40_48 of Specimen 5 , Clip 5 start (i.e., Clip 4 end) images with respective mask overlays: (a) Left endoscope view, (b) Zivid view
Figure 10: Sample pointclouds extracted for initial (left) and end (right) states on one sequence from our dataset, obtained using the ForPlane [ 20 ] method.
Pre-Filter
Retained
Specimen
Prior to Filter
Total
(i) Single
(ii) Incremental
(iii) Moved Camera
0
24
0
0
0
0
1
37
16
9
7
0
2
14
14
7
5
2
3
19
15
8
6
1
4
33
32
15
12
5
Table 1: Summary of Clip Counts by Specimen
Metric / Set
Mean
Median
Std
Min
Max
Median Dist (mm) - Nominal
5.63
4.25
3.51
1.10
15.25
Median Dist (mm) - Curated
2.37
2.15
1.20
0.52
7.26
Median Dist (mm) - ICP
2.70
2.32
1.69
0.52
14.11
Inliers < 1mm (%) - Nominal
8.60
5.48
8.40
0.00
46.98
Inliers < 1mm (%) - Curated
33.90
32.62
10.38
6.84
79.11
Inliers < 1mm (%) - ICP
26.02
26.16
12.85
0.26
79.13
Table 2: Summary statistics of point-to-point distances from points in Stereo Depth -derived point cloud to SLC pointcloud after transformation with Nominal, Curated, and ICP poses evaluation sets (N = 540 pointclouds).
Reconstructing deformable surgical scenes from endoscopic videos is challenging and clinically important. Recent state-of-the-art methods based on implicit neural representations or 3D Gaussian splatting have made notable progress. However, most are designed for deformable scenes with fixed endoscope viewpoints and rely on stereo depth priors or accurate structure-from-motion for initialization and optimization, limiting their ability to handle monocular sequences with large camera motion in real clinical settings. To address this, we propose Local-EndoGS, a high-quality 4D reconstruction framework for monocular endoscopic sequences with arbitrary camera motion. Local-EndoGS introduces a progressive, window-based global representation that allocates local deformable scene models to each observed window, enabling scalability to long sequences with substantial motion. To overcome unreliable initialization without stereo depth or accurate structure-from-motion, we design a coarse-to-fine strategy integrating multi-view geometry, cross-window information, and monocular depth priors, providing a robust foundation for optimization. We further incorporate long-range 2D pixel trajectory constraints and physical motion priors to improve deformation plausibility. Experiments on three public endoscopic datasets with deformable scenes and varying camera motions show that Local-EndoGS consistently outperforms state-of-the-art methods in appearance quality and geometry. Ablation studies validate the effectiveness of our key designs. Code will be released upon acceptance at: https://github.com/IRMVLab/Local-EndoGS.
Jiwei Shan, Zeyu Cai, Cheng-Tai Hsieh +5
Department of Mechanical and Automation Engineering and T Stone Robotics Institute, The Chinese University of Hong Kong, Hong Kong. · Shenyang Institute of Automation, Chinese Academy of Sciences, Shenyang, China · State Key Laboratory of Robotics and Intelligent Systems, Shenyang, China +3
Dense 3D reconstruction and tracking of dynamic scenes from monocular video remains an important open challenge in computer vision. Progress in this area has been constrained by the scarcity of high-quality datasets with dense, complete, and accurate geometric annotations. To address this limitation, we introduce Syn4D, a multiview synthetic dataset of dynamic scenes that includes ground-truth camera motion, depth maps, dense tracking, and parametric human pose annotations. A key feature of Syn4D is the ability to unproject any pixel into 3D to any time and to any camera. We conduct extensive evaluations across multiple downstream tasks to demonstrate the utility and effectiveness of the proposed dataset, including 4D scene reconstruction, 3D point tracking, geometry-aware camera retargeting, and human pose estimation. The experimental results highlight Syn4D's potential to facilitate research in dynamic scene understanding and spatiotemporal modeling.
Zeren Jiang, Yushi Lan, Yihang Luo +8
VGG, University of Oxford · Nanyang Technological University · Naver Labs Europe
Reconstructing dynamic non-rigid objects from monocular video requires integrating visual cues from direct observations with data-driven priors over geometry and appearance. Prior approaches either learn to directly predict 4D representations from visual input or initialize a 3D representation that is subsequently deformed and refined based on video evidence. However, the former are constrained by the scarcity of 4D training data, while the latter leverage priors only for the initial reconstruction and rely solely on video supervision thereafter; neither handles complex in-the-wild scenarios with large deformations and occlusions well. We present Lift4D, a test-time optimization framework that addresses both limitations. First, we adapt an existing single-view 3D reconstruction model to yield temporally consistent per-frame predictions via causal latent conditioning, providing a coherent initialization for a deformable 3D Gaussian Splatting representation. We then ``sculpt'' this representation to match the input video through an occlusion-aware optimization that faithfully recovers visible surface details while completing unobserved regions using a view-conditioned diffusion prior. We demonstrate that Lift4D clearly improves over prior 4D reconstruction methods, particularly on challenging in-the-wild sequences with severe occlusions and non-rigid motion.