STEP: Scientific Time-Series Encoder Pretraining via Cross-Domain Distillation

Self-supervised foundation models have achieved remarkable success across domains, including time series. However, the potential of non-contrastive methods, a paradigm that has driven significant advances in computer vision, remains underexplored for time series. In this work, we adapt DINOv2-style self-distillation to pretrain a time series foundation model, building on the Mantis tokenizer and transformer encoder architecture as our backbone. Through a student-teacher framework, our method Utica learns representations that capture both temporal invariance via augmented crops and fine-grained local structure via patch masking. Our approach achieves state-of-the-art classification performance on both UCR and UEA benchmarks. These results suggest that non-contrastive methods are a promising and complementary pretraining strategy for time series foundation models.

The deployment of Time-Series Foundation Models (TSFMs) in physical sciences is hindered by a critical trade-off: while these models encode rich, universal temporal dynamics, they suffer from severe distributional misalignment when applied zero-shot to specific scientific domains, and their computational cost prohibits deployment in edge-computing sensor networks. We address a fundamental challenge: How can we extract latent structural knowledge from misaligned foundation models (FM) to train lightweight, specialized forecasters? We propose Gated Uncertainty-Aware Routing for Distillation (Guard), a novel framework that reframes multiteacher distillation as an instance-wise decision process with two adaptive mechanisms: (1) a Contextual Router that dynamically selects the most relevant teacher based on local input statistics, exploiting complementarity across diverse foundation models; and (2) an Uncertainty-Gated Temperature mechanism that acts as a "circuit-breaker," automatically attenuating distillation strength when teacher confidence diverges from domain reality. We evaluate our proposed lightweight framework on four climate-critical domains: meteorology, ecosystem carbon flux, soil moisture, and energy grids. Our method significantly reduces RMSE relative to a fixed-weight multi-teacher distillation baseline, successfully distilling knowledge from pretrained FMs (teachers) even when they exhibit suboptimal zero-shot accuracy due to distribution shift between the original and target data domains. We demonstrate that these domain-misaligned teachers can still serve as critical correctives, outperforming the globally superior FMs on 28.5% of the hardest instances. Ultimately, this enables high-precision scientific forecasting suitable for resource-constrained edge deployment. Code is available at https://github.com/RupasreeDey/GUARD-KDD2026.

While Next-Token Prediction (NTP) has unified LLM pretraining, its adaptation to unbounded, continuous time series (TS) remains open. To bridge the gap, we introduce UniTok, a universal tokenizer that transforms TS into discrete tokens, and UniTok-FM, a foundation model pretrained via NTP on these tokens. UniTok-FM is a general-purpose foundation model that supports zero-shot and prompt-boosted forecasting, as well as few-shot generation and classification via training-free in-context inference--a capability not achieved by prior works. Technically, UniTok is a vector-quantized autoencoder incorporating prefix normalization for scale stabilization, a progressive-resolution causal architecture for encoding and decoding, and a structure-preserving reconstruction loss for training. UniTok-FM adopts an off-the-shelf LLM architecture without TS-specific modifications. Instead of pretraining on isolated TS, it performs NTP on context windows formed by multiple series with similar patterns, aiming to capture their shared dynamics. Experiments on forecasting, generation, and classification show that a single unified UniTok-FM consistently outperforms statistical and supervised baselines, achieves competitive performance with task-specific foundation models, and uniquely enables training-free in-context inference across tasks.