Organizations: School of Software Engineering, Yunnan University, KunMing, 650500, Yunnan, China. · The School of Artificial Intelligence, The Chinese University of Hong Kong, Shenzhen, 518172, Guangdong, China. · Yunnan Provincial Key Laboratory of Software Engineering, Yunnan University, Kunming, 650500, Yunnan, China.
Recently Mamba-based methods have shown promise in abdominal organ segmentation. However, existing approaches neglect cross-channel anatomical semantic collaboration and lack explicit boundary-aware feature fusion mechanisms. To address these limitations, we propose CS-MUNet with two purpose-built modules. The Boundary-Aware State Mamba module employs a Bayesian-attention framework to generate pixel-level boundary posterior maps, injected directly into Mamba's core scan parameters to embed boundary awareness into the SSM state transition mechanism, while dual-branch weight allocation enables complementary modulation between global and local structural representations. The Channel Mamba State Aggregation module redefines the channel dimension as the SSM sequence dimension to explicitly model cross-channel anatomical semantic collaboration in a data-driven manner. Experiments on two public benchmarks demonstrate that CS-MUNet consistently outperforms state-of-the-art methods across multiple metrics, establishing a new SSM modeling paradigm that jointly addresses channel semantic collaboration and boundary-aware feature fusion for abdominal multi-organ segmentation.
Figures & tables
Figure 1: Overall architecture of CS-MUNet and its two proposed modules.(a) U-shaped encoder-decoder with CMSA at the bottleneck and BASM at each skip connection fusing Fe and decoder feature Fd .(b)CMSA processes grouped channel sequences via a shared SSM, where Aˉk , γk denote the state transition matrix and cumulative decay under Lipschitz constraints, and μk , hk+1 , and yk the input, hidden state, and output of the k-th channel.(c) BASM injects boundary posterior Pb derived from guidance map M and distance field d~ into VMamba’s Δ and B parameters to yield Fssm , fused with Fsafs to produce Fout .
Dataset
Method
mDice
mIoU
Params (M)
UW-Madison GI Tract
U-Net Ronneberger et al. (2015)
0.8312
0.7562
32.66
Att-UNet Oktay et al. (2018)
0.8314
0.7564
67.85
TransUNet Chen et al. (2024)
0.8163
0.7394
117.19
Swin-UNet Cao et al. (2023)
0.8292
0.7531
41.48
UNet++ Zhou et al. (2018)
0.8311
0.7487
92.63
MSDUNet (2025) Li et al. (2025)
0.8325
0.7575
116.82
Table 1: Comparison with state-of-the-art methods on the UW-Madison GI Tract and WORD datasets. The best result in each group is shown in bold .
Dataset
Organ
Dice
IoU
HD95 (mm)
ASD (mm)
UW-Madison GI Tract
Stomach
0.8862
0.8421
6.83
2.35
Small Bowel
0.8252
0.7400
15.41
3.87
Large Bowel
0.8735
0.7927
15.19
4.03
WORD
Liver
0.9660
0.9512
5.34
1.40
Right Kidney
0.9751
0.9639
2.38
0.85
Spleen
0.9807
0.9699
1.73
0.64
Table 2: Per-organ segmentation results of CS-MUNet on the UW-Madison GI Tract and WORD datasets. HD95 is reported in mm; ASD is reported in mm.
Dataset
Configuration
mDice
mIoU
UW-Madison GI Tract
Baseline
0.8312
0.7562
Baseline + BASM
0.8432
0.7719
Baseline + CMSA
0.8484
0.7755
w/o Δ /B modulation
0.8537
0.7819
w/o SE-style weight allocation
0.8484
0.7749
CS-MUNet (Ours)
0.8616
0.7916
Table 3: Ablation study of CS-MUNet on the UW-Madison GI Tract and WORD datasets. The best result in each group is shown in bold .
Experiment
Value
mDice (%)
mIoU (%)
Optimal
Vary μR (fixed μE=1.2 )
0.5
85.64
78.58
×
0.8
86.16
79.16
✓
1.2
85.52
78.39
×
Vary μE (fixed μR=0.8 )
0.6
85.55
78.47
×
1.2
86.16
79.16
✓
1.5
85.69
78.60
×
Table 4: Hyperparameter sensitivity analysis on the UW-Madison GI Tract dataset. All metrics are reported as percentages (%). Bold indicates the optimal value in each group.
Figure 2: Comparison of parameter count (M) and computational cost (FLOPs, G) across all comparison models and ablation variants, with Ours highlighted in red.
Figure 3: Qualitative segmentation comparisons across five representative WORD CT samples (coronal, sagittal, and axial views).
Figure 4: Per-slice segmentation comparisons on five representative UW-Madison MRI cases across three organ categories: stomach (red), small bowel (green), and large bowel (blue).
Medical image segmentation delineates organs, lesions, and other structures in scans to support measurement, diagnosis, treatment planning, and research.
Multi-organ segmentation in medical imaging remains challenging due to large anatomical variability, complex inter-organ dependencies, and diverse organ scales and shapes. Conventional encoder-decoder architectures often struggle to capture both fine-grained local details and long-range context, which are crucial for accurate delineation - especially for small or deformable organs. To address these limitations, we propose MD-RWKV-UNet, a dynamic encoder network that enables scale-aware representation and spatially adaptive context modeling. At its core is the MD-RWKV block, a dual-path module that integrates deformable spatial shifts with the Receptance Weighted Key Value mechanism, allowing the receptive field to adapt dynamically to local structural cues. We further incorporate Selective Kernel Attention to enable adaptive selection of convolutional kernels with varying receptive fields, enhancing multi-scale interaction and improving robustness to organ size and shape variation. In parallel, a cross-stage dual-attention fusion strategy aggregates multi-level features across the encoder, preserving low-level structure while enhancing semantic consistency. Unlike methods that stack static convolutions or rely heavily on global attention, our approach provides a lightweight yet expressive solution for dynamic organ modeling. Experiments on Synapse and ACDC demonstrate state-of-the-art performance, particularly in boundary precision and small-organ segmentation.
Zhuoyi Fang
School of Mathematical Sciences Yangzhou University
Accurate polyp segmentation is critical for computer-aided colonoscopy, yet endoscopic images often contain low-contrast boundaries, mucosal texture interference, specular highlights, and device-dependent appearance shifts. Vision State Space Models (SSMs) provide efficient long-range modeling with linear complexity, but existing Vision Mamba segmentation models typically convert 2D features into 1D scanning sequences, which may weaken local geometric continuity and over-smooth irregular contours. We propose CSG-Mamba, a convolutional scoring gating Vision State Space network for endoscopic polyp segmentation. Built on a VM-UNet-style asymmetric U-shaped encoder-decoder, CSG-Mamba inserts a Convolutional Scoring Gating (CSG) module at the semantically rich bottleneck. CSG generates a local spatial score map through pointwise and large-kernel depthwise convolutions and recalibrates state-space features by multiplicative gating. Experiments with three random seeds show that CSG-Mamba achieves 0.9220 Dice and 15.87 HD95 on Kvasir-SEG, and 0.7418 Dice and 0.6570 mIoU on CVC-ColonDB, outperforming the baselines on most overlap and recall metrics while maintaining competitive boundary accuracy.
Yuliang Wang, Jiaqi Wu, Jiaye Song +1
School of Advanced Interdisciplinary Studies, Tiangong University, Tianjin, China
This work proposes a lightweight 2D-U-Net-based framework for segmenting five abdominal organs in large field-of-view 3D CT scans. The method combines coarse-to-fine segmentation, predictions from multiple anatomical planes, and additional fuzzy 3D spatial maps that provide anatomical location cues to improve segmentation accuracy. We combine multi-planar 2D-U-Net models augmented by a spatial occurrence map. The approach involves two main stages. First, the abdominal volume of interest region is detected by traversing the whole scan axially with a 2D-U-Net and determining the x-y-z-minimum and -maximum extents of the 5 abdominal organs of interest. Second, we use spatial occurrence maps to enhance our multi-planar 2D-U-net architecture inside the bounds from the former stage. The method is evaluated on 80 CT scans from various public sources. The results show Dice improvements of about 4% at maximum compared to the same model trained without spatial occurrence maps.
Daria Kern, Negar Chabi, Souraj Adhikary +1
Glasgow Caledonian University School of Science & Engineering Glasgow G4 0BA, United Kingdom · Jade University of Applied Sciences Department of Engineering & Medical Technology Germany, 26389, Wilhelmshaven, Germany