Capturing dynamic spatiotemporal neural activity is essential for understanding large-scale brain mechanisms. Functional magnetic resonance imaging (fMRI) provides high-resolution cortical representations that form a strong basis for characterizing fine-grained brain activity patterns. The high acquisition cost of fMRI limits large-scale applications, therefore making high-quality fMRI reconstruction a crucial task. Electroencephalography (EEG) offers millisecond-level temporal cues that complement fMRI. Leveraging this complementarity, we present an EEG-conditioned framework for reconstructing dynamic fMRI as continuous neural sequences with high spatial fidelity and strong temporal coherence at the cortical-vertex level. To address sampling irregularities common in real fMRI acquisitions, we incorporate a null-space intermediate-frame reconstruction, enabling measurement-consistent completion of arbitrary intermediate frames and improving sequence continuity and practical applicability. Experiments on the CineBrain dataset demonstrate superior voxel-wise reconstruction quality and robust temporal consistency across whole-brain and functionally specific regions. The reconstructed fMRI also preserves essential functional information, supporting downstream visual decoding tasks. This work provides a new pathway for estimating high-resolution fMRI dynamics from EEG and advances multimodal neuroimaging toward more dynamic brain activity modeling.
Figures & tables
Figure 2: Architecture and inference workflow of our framework. Top: End-to-end inference pipeline, where EEG features condition a diffusion-transformer-based reconstruction process to produce spatiotemporal fMRI sequences. Bottom: (a) Transformer-based denoising network that jointly models vertex-level tokens with sequence-level EEG cross-attention to reconstruct coherent fMRI trajectories. (b) Null-space sampling module (InterRecon) that enforces measurement consistency during reverse diffusion, enabling intermediate frame reconstruction without retraining.
Frame
Method
Whole Brain
Visual
Visual+Audio
MSE ↓
r ↑
cos ↑
MSE ↓
r ↑
cos ↑
MSE ↓
r ↑
cos ↑
3
CNN-TC [ 16 ]
0.302
0.808
0.832
0.212
0.823
0.873
0.217
0.836
0.875
CNN-TAG [ 2 ]
0.297
0.812
0.835
0.207
0.828
0.879
0.212
0.840
0.878
E2FNet [ 21 ]
0.288
0.818
0.833
0.204
0.831
0.880
0.205
0.844
0.882
E2FGAN [ 21 ]
0.280
0.819
0.840
0.196
0.832
0.882
0.203
0.846
0.884
Ours
0.282
0.822
0.847
0.196
0.834
0.886
0.200
0.848
0.887
Table 1: Comparison of fMRI Reconstruction Performance. We compare our method against baseline approaches across different frame lengths and spatial regions (whole brain, visual cortex, and visual–audio cortex). Results are averaged over six subjects.
Method
MSE ↓
r↑
Cos ↑
Linear
0.280
0.830
0.851
Ours w/o null space
0.272
0.839
0.852
Ours w/ null space
0.250
0.852
0.865
Table 2: Comparison of interpolation and null-space strategies. We compare linear interpolation , our model without null-space sampling , and our full model that incorporates null-space sampling for enhanced temporal and structural consistency.
Figure 3: Comparison of intermediate fMRI frame reconstruction (InterRecon) performance across different frame lengths and methods.
Figure 4: Vertex-level cortical surface visualization of reconstructed fMRI alongside ground truth. The top row shows our reconstructed fMRI (Recon.); the middle row shows the ground-truth fMRI (GT); and the bottom row displays the reconstruction error map; the color scale indicates BOLD signal intensity.
Figure 5: Functional validation through visual decoding. Comparison between video frames decoded from our reconstructed fMRI (Pred.) and the corresponding ground-truth video frames (GT) using the CineSync-f decoder.
Figure S1 : Functional validation through visual decoding. Comparison among the original stimulus video frames Video (GT), the frames decoded from ground-truth fMRI Video (Real fMRI), and the frames decoded from our reconstructed fMRI Video (Pred. fMRI) using the CineSync-f decoder. These three-way visual comparisons further illustrate the preservation of semantic content in the reconstructed fMRI.
Figure S2 : Functional validation through visual decoding. Comparison among the original stimulus video frames Video (GT), the frames decoded from ground-truth fMRI Video (Real fMRI), and the frames decoded from our reconstructed fMRI Video (Pred. fMRI) using the CineSync-f decoder. These three-way visual comparisons further illustrate the preservation of semantic content in the reconstructed fMRI.
Accelerated acquisition of fMRI enables enhanced detection of neurovascular (BOLD) activity in the brain, but image reconstruction becomes challenging with high k-space undersampling: Task-evoked BOLD signals are small in magnitude, which traditional anatomical MRI reconstruction methods fail to recover, as they favor spatial accuracy over temporal fidelity. We present DD-INR, a Dynamics-Driven Implicit Neural Representation framework tailored for accelerated fMRI that benefits from incoherent time-varying sampling and a tailored spatiotemporal prior, outperforming traditional methods, demonstrated in simulation and in-vivo acquisition, both in terms of image quality and retrieval of activation patterns. DD-INR achieves this by splitting the fMRI data into a static background and a temporally varying dynamic component, representing only the dynamics with a dedicated INR, thereby focusing the model's capacity on activation-relevant changes while remaining compact. In general, DD-INR provides a promising framework for accelerated fMRI reconstruction, with the potential to improve the sensitivity and robustness of fMRI studies within practical scan time limits. The source code is available at https://github.com/JoosenLi/DD-INR.
Qiaoxin Li, Caini Pan, Pierre-Antoine Comby +2
MIND · MIND, Inria, Palaiseau, France · Neurospin, CEA Paris Saclay, France +3
Translating electroencephalography (EEG) into functional magnetic resonance imaging (fMRI) is important for medical neuroimaging, clinical brain-state monitoring, and multimodal neural decoding, because it aims to infer spatially organized hemodynamic activity from fast and accessible electrophysiological recordings. Existing EEG-to-fMRI studies mainly pursue stronger decoders, but the problem is also constrained by a representation-interface mismatch: fMRI responses are delayed, temporally integrated, and spatially distributed, whereas generic EEG encodings often entangle temporal lag, channel identity, and frequency-band structure. We propose Multi-band EEG Latent-state Tokenization (MEL), a coordinate-preserving EEG representation framework that anchors each target fMRI response to its preceding EEG history and organizes it into lag-channel-frequency neural-state tokens. By explicitly capturing hemodynamic latency and spectral-spatial dynamics, MEL aligns fMRI-pertinent EEG representations with capacity-controlled readouts without depending entirely on model scaling. Experiments on VU EEG-fMRI benchmarks and external Oddball data show that MEL improves prediction over strong NeuroBOLT baselines. Ablations and controls further indicate that the gains come from structured EEG representation rather than leakage, shortcut statistics, or decoder capacity.
Xiangyu Liu, Zeting Yan, Zhitong Yin +2
Beijing Normal-Hong Kong Baptist University · The University of Hong Kong · Peking University
Reconstructing dynamic visual experiences from brain activity provides a compelling avenue for exploring the neural mechanisms of human visual perception. While recent progress in fMRI-based image reconstruction has been notable, extending this success to video reconstruction remains a significant challenge. Current fMRI-to-video reconstruction approaches consistently encounter two major shortcomings: (i) inconsistent visual representations of salient objects across frames, leading to appearance mismatches; (ii) poor temporal coherence, resulting in motion misalignment or abrupt frame transitions. To address these limitations, we introduce SemVideo, a novel fMRI-to-video reconstruction framework guided by hierarchical semantic information. At the core of SemVideo is SemMiner, a hierarchical guidance module that constructs three levels of semantic cues from the original video stimulus: static anchor descriptions, motion-oriented narratives, and holistic summaries. Leveraging this semantic guidance, SemVideo comprises three key components: a Semantic Alignment Decoder that aligns fMRI signals with CLIP-style embeddings derived from SemMiner, a Motion Adaptation Decoder that reconstructs dynamic motion patterns using a novel tripartite attention fusion architecture, and a Conditional Video Render that leverages hierarchical semantic guidance for video reconstruction. Experiments conducted on the CC2017 and HCP datasets demonstrate that SemVideo achieves superior performance in both semantic alignment and temporal consistency, setting a new state-of-the-art in fMRI-to-video reconstruction.
Minghan Yang, Lan Yang, Ke Li +3
Beijing University of Posts and Telecommunications · University of Surrey