A High-Resolution Landscape Dataset for Concept-Based XAI With Application to Species Distribution Models

Knowing where species occur is fundamental for biodiversity research and conservation. Species distribution models (SDMs) link species observations to environmental conditions to estimate their spatial distribution. However, accuracy varies with the underlying data and models, making it essential to know for which species models can be trusted. Deep-learning-based SDMs ("DeepSDMs") now jointly model thousands of species, drawing on hundreds of millions of community-science records. At this scale, averaging performance hides substantial species-level variability, particularly for rare species, often of greatest conservation concern. Records are also strongly biased, making occurrence counts misleading. Accounting for these factors is essential for a reliable and informative evaluation of multi-species SDMs. Here, we introduce a Sampling-Aware Global Evaluation (SAGE) benchmark, combining GBIF records for training with sPlotOpen vegetation plots for presence-absence evaluation across 5771 plant species. We propose an evaluation framework that groups species based on two properties, sampling effort and relative prevalence, which describe how densely a species' range is sampled and how frequently the species is recorded. Evaluating single-species SDMs and multi-species DeepSDMs, we find that Random Forests and DeepSDMs perform best overall, but neither dominates: DeepSDMs outperform single-species SDMs for infrequently recorded species while offering no consistent advantage for well-sampled ones. Crucially, this advantage emerges only when established bias-correction practices, such as spatial thinning and reweighting, are carried over to the deep-learning setting. SAGE helps identify the species and data conditions for which a given approach is beneficial, thereby supporting the development of more transparent and ecologically credible SDMs. Data and code: https://earens.github.io/sage/

Artificial intelligence is transforming biodiversity monitoring by enabling automated analysis of ecological imagery collected from camera traps, drones, satellites, underwater platforms, and other sensing systems. These tools can expand the scale and speed of conservation assessments, yet many computer vision models remain difficult to inspect, making it challenging to determine whether predictions are based on ecologically meaningful signals or on spurious correlations, sampling biases, and other artifacts that may undermine conservation decisions. We argue that explainable artificial intelligence (XAI) should become a standard component of ecological model validation because conservation practitioners increasingly depend on understanding not only whether a model is accurate, but why it is accurate. We provide practical guidance for applying XAI to three common ecological computer vision tasks: image classification, object detection, and image segmentation. To illustrate how XAI can support ecological model auditing, refinement, and deployment, we present two case studies using aerial imagery: harbor seal detection and cetacean anatomical segmentation. These examples demonstrate how explanation methods can identify biologically meaningful cues, reveal false positives driven by background and shape confounds, uncover edge and occlusion effects, and guide data collection, augmentation, and retraining strategies. More broadly, they show how explainability can help assess whether model reasoning aligns with ecological understanding. We conclude by identifying key challenges and opportunities. By making model behavior more transparent and scientifically interrogable, XAI can help ensure that AI-supported ecological evidence is more reliable, understandable, and actionable for biodiversity conservation.

Joint Species Distribution Modeling (JSDM) is a key enabler for biodiversity monitoring and conservation planning. However, accurate JSDM faces two coupled challenges: environmental drivers and species distributions are inherently spatio-temporal, while species co-occurrence patterns exhibit complex non-linear community structure and severe long-tail imbalance driven by rare species. Existing approaches often address these factors in isolation, learning from static covariates or neglecting the historical trajectories of dynamic community structure. To overcome these limitations, we propose STELLAR (Spatio-Temporal Environmental Learning with Latent Alignment and Refinement), a novel framework that learns a shared latent space where dynamic habitat context and community structure are optimized jointly. Our approach integrates three complementary components: (1) a Graph-Temporal Encoder that employs graph attention and recurrent units to aggregate spatial neighborhood effects and capture the co-evolving historical dynamics of environmental context and community structure; (2) a Context-Anchored Latent Alignment mechanism that structures the latent space using a label-activated mixture prior and supervised contrastive learning, actively clustering species based on shared environmental preferences; and (3) an Imbalance-Aware Decoupled Decoding module that utilizes Asymmetric Loss to focus learning on hard, rare species samples, preventing mode collapse in the long tail. Experiments on the large-scale eBird dataset, curated with domain experts, demonstrate that our framework significantly outperforms state-of-the-art baselines, particularly in predicting rare species and revealing interpretable species interactions.