Credal Concept Bottleneck Models for Epistemic-Aleatoric Uncertainty Decomposition
Authors: Tanmoy Mukherjee, Thomas Bailleux, Pierre Marquis, Zied Bouraoui
Organizations: Univ. Artois, CNRS, CRIL, France · Institut Universitaire de France
Abstract
Concept Bottleneck Models (CBMs) predict through human-interpretable concepts, but they typically output point concept probabilities that conflate epistemic uncertainty (reducible model underspecification) with aleatoric uncertainty (irreducible input ambiguity). This makes concept-level uncertainty hard to interpret and, more importantly, hard to act upon. We introduce CREDENCE (Credal Ensemble Concept Estimation), a CBM framework that decomposes concept uncertainty by construction. CREDENCE represents each concept as a credal prediction (a probability interval), derives epistemic uncertainty from disagreement across diverse concept heads, and estimates aleatoric uncertainty via a dedicated ambiguity output trained to match annotator disagreement when available. The resulting signals support prescriptive decisions: automate low-uncertainty cases, prioritize data collection for high-epistemic cases, route high-aleatoric cases to human review, and abstain when both are high. Across several tasks, we show that epistemic uncertainty is positively associated with prediction errors, whereas aleatoric uncertainty closely tracks annotator disagreement, providing guidance beyond error correlation. Our implementation is available at the following link: https://github.com/Tankiit/Credal_Sets/tree/ensemble-credal-cbm
Concept Bottleneck Models (CBMs) provide an interpretable framework by grounding predictions in human-understandable concepts, enabling semantic inspection and test-time intervention. Recent variants have improved CBMs through richer concept representations, uncertainty estimation, and dependency modeling. However, robust reasoning under unreliable concept states remains underexplored. Without such reasoning, misleading semantic evidence can propagate through the bottleneck, compromising both explanations and downstream predictions. To address this issue, we propose ReCBM, an uncertainty-gated relational reasoning framework for CBMs. ReCBM introduces semantically defined concept relations into the bottleneck and uses uncertainty to guide their refinement. By modeling co-occurrence, implication, and exclusion, ReCBM specifies how evidence is exchanged across concepts, while uncertainty modulates the contribution of each concept during this process. Experiments across diverse datasets showed that ReCBM improved concept and task recovery under missing and flipped concepts, supported uncertainty-aware intervention, and extracted compact task-relevant concept subsets without degrading downstream performance.
Current evaluation of epistemic uncertainty relies on tasks such as out-ofdistribution detection and active learning. However, the Bayes-optimal decision strategies for these tasks do not coincide with the scores commonly used to quantify epistemic uncertainty. Building on the epistemic reject-option framework, we evaluate epistemic uncertainty using its ability to identify regret, the reducible error. Formulating selective prediction as a constrained optimization over coverage, expected risk, and regret, we prove the optimal selector is a thresholded convex combination of the ground-truth aleatoric and epistemic uncertainties. This theoretical unification exposes a weakness in recent uncertainty disentanglement literature: we demonstrate that standard correlation metrics between learned components do not necessarily predict their actual operational utility. We instead propose to evaluate the achievable risk, regret, coverage surface of the decomposition as a diagnostic for joint disentanglement and utility. Benchmarking standard methods on datasets with dense human annotations reveals that decision-theoretic rankings can disagree substantially with proxy-task rankings, including pairwise rank inversions between methods that are top-ranked on one criterion and bottom-ranked on other.
Jakub Paplhám, Willem Waegeman, Eyke Hüllermeier +1
Accurate uncertainty quantification is critical for reliable predictive modeling. Existing methods typically address either aleatoric uncertainty due to measurement noise or epistemic uncertainty resulting from limited data, but not both in a balanced manner. We propose CLEAR, a calibration method with two distinct parameters, γ1 and γ2, to combine the two uncertainty components and improve the conditional coverage of predictive intervals for regression tasks. CLEAR is compatible with any pair of aleatoric and epistemic estimators; we show how it can be used with (i) quantile regression for aleatoric uncertainty and (ii) ensembles drawn from the Predictability-Computability-Stability (PCS) framework for epistemic uncertainty. Across 17 diverse real-world datasets, CLEAR achieves an average improvement of 28.3% and 17.5% in the interval width compared to the two individually calibrated baselines while maintaining nominal coverage. Similar improvements are observed when applying CLEAR to Deep Ensembles (epistemic) and Simultaneous Quantile Regression (aleatoric). The benefits are especially evident in scenarios dominated by high aleatoric or epistemic uncertainty. Project page: https://unco3892.github.io/clear/