When a chest X-ray shows consolidation but the question asks which finding is present, a medical vision-language model may answer "No consolidation." This is more than an incorrect choice: it is a polarity reversal that emits a clinical statement contradicting the image. We study this failure as negated-option attraction, where a model is drawn to a negated answer option even when it conflicts with both the visual evidence and the question. We introduce CXR-ContraBench (Chest X-Ray Contradiction Benchmark), a diagnostic benchmark spanning internal ReXVQA slices and external OpenI and CheXpert protocols. The benchmark centers on present-finding questions, where selecting "No X" despite visible X creates the main clinical risk, and uses absent-finding questions as secondary tests of whether models copy negated wording. Across CheXpert protocols, the failure is substantial and persistent. On a strict direct presence probe, MedGemma and Qwen2.5-VL reach only 31.49% and 30.21% accuracy, respectively; on a matched 135,754-record CheXpert training-split protocol, both models select negated options on over 62% of presence questions. Chain-of-thought prompting reduces some presence-side reversals but does not eliminate them and can amplify absence-side contradictions. Finally, QCCV-Neg (Question-Conditioned Consistency Verifier for Negation) deterministically repairs the measured polarity-confused subset without retraining, raising MedGemma and Qwen2.5-VL to 96.60% and 95.32% accuracy on the direct presence probe. These results show that standard accuracy can hide a clinically meaningful inference-time polarity failure. Source code and benchmark construction scripts are available at https://github.com/fangzr/cxr-contrabench-code.
Large Vision Language Models (LVLMs) show promise in medical applications, but their inability to faithfully ground responses in visual evidence raises serious concerns about clinical trustworthiness. While visual attribution methods are widely used to explain LVLM predictions, whether these explanations actually reflect the visual evidence underlying the model's decision is largely unverified, since ground-truth annotations for internal model reasoning are typically unavailable. We address this question for chest X-ray (CXR) reasoning by developing a causal evaluation framework that retains only CXR-VQA samples for which the expert-annotated region is verified, via counterfactual editing, to be causally responsible for the model's prediction. Using this framework across 11 attribution methods, six open-source LVLMs, and two output modes (direct answer and step-by-step reasoning), we find that existing attribution methods often fail to identify the evidence used by LVLMs. To address this failure, we propose MedFocus, a concept-based attribution method that localizes clinically meaningful anatomical regions via unbalanced optimal transport and measures their causal effect on model outputs through targeted interventions. MedFocus produces spatial, concept-level, and token-level attributions and substantially outperforms prior methods, taking a step toward more trustworthy attribution for medical LVLMs. Our data and code are available at https://github.com/gzxiong/medfocus/.
Large chest radiography archives are difficult to search because most studies are paired only with free-text reports rather than structured clinical annotations. Vision-language models offer a natural interface for text-to-image retrieval, but current biomedical models are primarily optimized for report-to-image matching rather than for satisfying short clinical search queries. This creates an objective mismatch: a model may retrieve images related to words in the query while failing to satisfy the full clinical constraint, especially for conjunctions and negations such as ``atelectasis and no pneumonia.'' We introduce CXR-Retrieve, a structured benchmark for compositional chest X-ray text-to-image retrieval. The benchmark contains 5,159 test images from the official test-split of MIMIC-CXR-JPG and 145 textual queries spanning single and conjunction findings, both positive and negative. Relevance is defined by whether a retrieved image satisfies all asserted pathology constraints, rather than by whether it matches a paired report. We further propose a label-aware contrastive fine-tuning objective for clinical retrieval. Our method attracts image-text pairs with compatible asserted pathology constraints, including shared confirmed absences, while explicitly repelling contradictory pairs. Starting from the in-domain CXR-CLIP checkpoint, our method improves Precision@5 over CXR-CLIP by 8.5 percentage points on two-pathology conjunctions and by 22.0 percentage points on negation queries. These results show that reliable chest X-ray retrieval requires training objectives that model not only which findings are mentioned, but also how they are clinically asserted.
Vision-language models (VLMs) are increasingly proposed for clinical decision support, yet their reliability in real-world scenarios that require integrating both visual and textual context from medical records remains poorly characterized. This paper identifies three failure modes: (1) modality over-reliance on text over images, (2) spurious reliance on irrelevant clinical history, and (3) prompt sensitivity across semantically equivalent inputs. We evaluate a diverse set of general-domain and medically-tuned open and closed VLMs on chest x-ray tasks using MIMIC-CXR. By systematically manipulating image-text alignment, clinical history, and prompt formulations, we found that VLM decisions are dominated by the text modality, even when visual evidence is available. Moreover, we observed that VLMs are heavily influenced by irrelevant reports, while minor prompt changes can reverse correct image-based predictions. Our findings underscore the need for explicit safeguards and stress-testing before considering the use of these models in clinical practice.