Feature Space Guidance for Breast Cancer Classification in DCE-MRI
Authors: Benjamin Hamm, Yannick Kirchhoff, Maximilian Rokuss, Moritz Langenberg, Constantin Ulrich, Tassilo Wald, Jeremias Traub, Karol Gotkowski, +1 more
Organizations: German Cancer Research Center (DKFZ) Heidelberg, Division of Medical Image Computing, Germany · Medical Faculty, Heidelberg University, Germany · Faculty of Mathematics and Computer Science, Heidelberg University, Germany · HIDSS4Health – Helmholtz Information and Data Science School for Health, Karlsruhe/Heidelberg, Germany · Helmholtz Imaging, German Cancer Research Center (DKFZ), Heidelberg, Germany · Pattern Analysis and Learning Group, Department of Radiation Oncology, Heidelberg University Hospital, Germany
Dynamic contrast enhanced breast MRI (DCE-MRI) is a powerful clinical tool for breast cancer detection, providing high resolution anatomical detail together with rich temporal contrast information. However, high dimensional 4D inputs, small lesions, and heterogeneous acquisition protocols across clinical sites hinder robust automated classification of healthy, benign, and malignant cases. To address these challenges, we propose a framework that dynamically analyzes latent representations to adapt to protocol-specific characteristics. Spatial variability is mitigated by reducing confounding background uptake and compensating for misalignment caused by deformable soft tissue. Additionally, relationships in the latent space across phases are leveraged to select the most informative temporal features, improving robustness to protocol-specific temporal variability. Finally, task specific discriminative features are promoted through large scale supervised lesion segmentation pretraining, which substantially enhances downstream finetuning. Evaluated under leave-one-center-out validation on the ODELIA dataset and the held-out AMBL cohort, the proposed framework substantially outperforms finetuned radiology foundation models and prior methods, improving mean AUROC by nearly 8 points and balanced accuracy by 4 points over the strongest baseline. Additionally, our method achieved first place in the MICCAI ODELIA Breast MRI Challenge 2025, further demonstrating its effectiveness for robust breast cancer classification. We publicly release our codebase under https://github.com/MIC-DKFZ/CURIAtor.
Figures & tables
Figure 1: Overview of the proposed foundation model-driven framework for breast cancer classification from DCE-MRI. The framework includes A) the BreastDivider model for ROI detection and breast separation, B) adaptive temporal signal analysis with the CURIAtor module selects the most informative features, C) large-scale anatomically informed pretraining, and D) transfer learning for final lesion classification.
Figure 2: Pairwise distance matrix D computed by the CURIAtor module for UMCU 0178187682 Right (ODELIA). Each entry encodes the volume-level similarity between two temporal acquisitions within the anatomically constrained ROI; lower values indicate higher similarity. Post4 is farthest from Post1 and from every other post-contrast phase, and is selected (purple) alongside Pre and Post1. Overlay: ∣Vn−VPost1∣ within the ROI on one axial slice.
Dynamic contrast-enhanced (DCE) imaging is the gold standard technique for the detection and characterization of breast cancer using magnetic resonance imaging (MRI). However, DCE-MRI requires long acquisition times and the administration of contrast into the bloodstream, which can cause allergic reactions. Alternatively, diffusion-weighted MRI (DW-MRI) is a standard complementary technique for breast MRI that does not require contrast, has shorter acquisition times, and enables calculation of apparent diffusion coefficient (ADC) maps that correlate with tumor cellularity. Yet, despite these technical advantages, deep learning research has focused on DCE-based models and has barely explored the tumor detection performance of DW-MRI and ADC maps either in combination with DCE-MRI or as standalone alternatives. Here, we evaluate the application of different state-of-the-art deep learning techniques for detection and segmentation of breast cancer using ADC-only images. This is, to our knowledge, the first comprehensive evaluation of ADC-only breast cancer pipelines for classification, detection, and segmentation tasks.
Pablo García Marcos, Paula Puerta Gonzĺez, Guillermo Lorenzo +4
Computer Sciences Department, University of Oviedo, Asturias, Spain · Biomedical Engineering Center (BME), University of Oviedo, Asturias, Spain · Electrical Engineering Department, University of Oviedo, Asturias, Spain +6
Breast DCE-MRI AI is increasingly being explored for breast-level classification of no-lesion, benign, and malignant findings, beyond conventional lesion-centered diagnosis. Within this broader diagnostic scope, however, patient-specific background variability remains a major source of imaging confounding across classification tasks. Existing approaches predominantly focus on unilateral or lesion-centric analysis, whereas bilateral methods offer limited explicit modeling of spatially adaptive cross-breast correspondence. We propose PRISM-Net, a registration-free bilateral framework that leverages contralateral breast features as patient-specific references for background-aware representation learning. PRISM-Net integrates bilateral feature matching and asymmetry-aware attention to establish adaptive inter-breast correspondence and enhance representations of discriminative asymmetric patterns. On ODELIA, Macro AUC, Micro AUC, and quadratic weighted kappa were 84.11±2.33, 90.64±1.61, and 60.94±5.64 on the in-distribution test set, and 68.51±4.54, 80.74±2.68, and 43.45±7.10 on the held-out institution, respectively, outperforming the evaluated baseline methods across the primary evaluation metrics. PRISM-Net further demonstrated performance on independent institutional and background-complexity evaluations. Ablation experiments revealed that both bilateral relation modeling and asymmetry-aware reweighting contributed to improved classification performance. These findings highlight patient-specific bilateral reference modeling as a clinically grounded strategy for DCE-MRI interpretation, improving asymmetric pattern discrimination through explicit modeling of background complexity.
Boya Zhang, Shuaiwen Zhou, Di Kong +7
Nankai University, No. 94 Weijin Road, Nankai District, Tianjin, 300071, China · Zhongguancun Academy, Beijing, China · Beijing University of Posts and Telecommunications, Beijing, China +5
Dynamic contrast-enhanced breast MRI (DCE-MRI) is rich in anatomical and perfusion information, but its reliance on gadolinium-based contrast agents raises safety concerns and adds cost. Virtual contrast enhancement, synthesizing post-contrast from pre-contrast images, is a promising alternative. We address the MAMA-SYNTH challenge task of predicting peak-enhancement breast MRI. Rather than adopting the full machinery of diffusion or flow matching, we observe that under a rectified, straight-line path the generative process collapses to a single difference prediction: the synthetic peak image is the pre-contrast image plus a predicted enhancement map, recovered in one forward pass. Around this we build Anguinus Sculpturae, a compositional pipeline in which nnU-Net segmentations of lesion, foreground and breast region guide two generators - one optimized for global fidelity, one for lesion structure through an asymmetric Tversky term routed via a frozen segmenter - composited region-wise with Gaussian-weighted blending. On the held-out Duke subset of MAMA-MIA our model achieves the best FRD and Dice among all evaluated variants, showing that single-step difference prediction with segmentation guidance suffices to recover both global fidelity and lesion structure. Code is available at https://github.com/MIC-DKFZ/AnguinusSculpturae.
Benjamin Hamm, Nico Albert Disch, Maximilian Rokuss +3
German Cancer Research Center (DKFZ) Heidelberg, Division of Medical Image Computing, Germany · Medical Faculty, Heidelberg University, Germany · Faculty of Mathematics and Computer Science, Heidelberg University, Germany +3