cs.CVOct 1, 2026

Synthetic training for long-tail haemorrhagic lesion segmentation in data-scarce settings

Authors: Yuan Cao, Sumeet Dash, Antonia Zachariadis, Stefanie Schreiber, Katja Neumann, Jose Bernal

Organizations: Department Artificial Intelligence in Biomedical Engineering (AIBE), Faculty of Engineering, Friedrich-Alexander-Universität Erlangen-Nürnberg (FAU), Nürnberger Strasse 74, 91052 Erlangen, Germany · Otto von Guericke University Magdeburg, Medical Faculty, Department of Neurology, Leipziger Straße 44, 39120 Magdeburg, Germany · German Centre for Neurodegenerative Diseases (DZNE), Leipziger Straße 44, 39120 Magdeburg, Germany · Institute for Neuroscience and Cardiovascular Research, Row Fogo Centre for Research into Ageing and The Brain, Department of Neuroimaging Sciences, The University of Edinburgh, 49 Little France Crescent, Edinburgh EH16 4TJ, UK

Abstract

Cerebral microbleeds (CMBs) and cortical superficial siderosis (cSS) are imaging markers of cerebral small vessel disease, but their automated segmentation is limited by the scarcity of positive cases and voxel-level annotations. We propose a synthetic training framework for long-tail haemorrhagic lesion segmentation that requires no real lesion annotations for training and leverages radiological description of the lesions. Starting from anatomical brain parcellations, the framework applies spatial augmentation and voxel resampling, procedurally inserts cSS and CMB labels using clinical priors on lesion location and morphology, and synthesises images through randomised intensity assignment, blurring, and Rician noise simulation. Models were trained on dynamically generated image-label pairs and evaluated against manual delineations in 10 cSS cases and 13 CMB cases. The proposed configurations outperformed classical filter baselines. For cSS, the hypointensity constrained model achieved higher AUPRC and AUROC than the Frangi filter (AUPRC: 0.284 vs 0.083; AUROC: 0.907 vs 0.731). For CMBs, explicit synthesis of blood vessels as lesion mimics improved performance over the classical baseline (AUPRC: 0.538 vs 0.004; AUROC: 0.999 vs 0.968). These results support our proposal as a feasible strategy for data-scarce haemorrhagic lesion segmentation.

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