Bioinformatics

Ask about this topic

Momentum

4 papers in the last four weeks, up 33% on the four weeks before. 0.0% of all new papers.

Jul 6Week of Sep 21
View on map

Latest papers 25

All topics
CardsList

  1. Surface-volume self-supervised representation learning of brain MRI for genetic discovery

    Oct 1, 2026Tian Xia, Nuo Chen, Zihao Zhu +4Functional Magnetic Resonance ImagingGenome-Wide Association Study

    D. Bradley McWilliams School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, US. · Department of Biomedical Informatics and Data Science, Yale School of Medicine, New Haven, US. · Department of Electrical and Computer Engineering, Texas A&M University, College Station, US. +1

  2. A Generalisation Signal Need Not Be a Model-Selection Signal

    Sep 30, 2026Aditya Nagarsekar, M P Ashish Bhat, Aadi Nesarkar +5Model SelectionSpearman Correlation

    Department of CS&IS, BITS Pilani, K K Birla Goa Campus · LexisNexis Legal & Professional · Center for AI and Supercomputing, Mahindra University

  3. SeqMaestro: From nucleotide sequences to biological hypotheses through interpretable machine learning

    Sep 14, 2026Evgeny S. Saveliev, Krzysztof Kacprzyk, Charlotte Capitanchik +7Genome-Wide Association StudyBioinformatics

    Department of Applied Mathematics and Theoretical Physics, University of Cambridge, Cambridge, UK · The Francis Crick Institute, London, UK · UK Dementia Research Institute at King’s College London, London, UK +1

  4. MorphoOrgaAgent: A Foundation-Model-Based Multi-Agent System for Autonomous Organoid Analysis

    Sep 8, 2026Hanyi Zhang, Maximilian Hoermann, Lion J. Gleiter +5TissueBrainagent

    Helmholtz AI, Helmholtz Munich - German Research Center for Environmental Health, Neuherberg, Germany · Department of Diagnostic and Interventional Radiology, University Hospital Heidelberg, Heidelberg, Germany · School of Computation, Information and Technology, Technical University of Munich, Munich, Germany +4

  5. Bioinfoysis Technical Report

    Sep 3, 2026Qingyang Shao, Xin Zhang, Zhouyang Yuan +24BioinformaticsLarge Language Model Agents

    DeepAutonomy Team

  6. An Agentic Retrobiosynthesis Framework with Learned Frontier Selection

    Aug 31, 2026Philippe Meyer, Guillaume Gricourt, Thomas Duigou +2Large Language Model Policy OptimizationSearch-Augmented Reasoning

    1Université Paris-Saclay, INRAE, AgroParisTech, Micalis Institute, Jouy-en-Josas, France

  7. BixBench3: Benchmarking AI agents on research-study-scale computational biology tasks

    Aug 26, 2026Zane Koch, Asmamaw T. Wassie, Javier Valdes-Aleman +5BioinformaticsArtificial Intelligence Agents

    Edison Scientific, Inc., San Francisco, CA, USA

  8. Static analysis-guided agentic AI translation enables Rust as a full stack bioinformatics language

    Aug 13, 2026Johan HenrikssonBioinformatics

    Department of Molecular Biology, Umeå University, Umeå, Sweden · Umeå Centre for Microbial Research (UCMR), Umeå University, Umeå, Sweden · Integrated Science Lab (IceLab), Umeå University, Umeå, Sweden +1

  9. string2string Studio: An Interactive, In-Browser Platform for String-to-String Algorithms

    Aug 4, 2026Mirac Suzgun, James Zou, Stuart M. Shieber +1Feature AlignmentBioinformatics

    Stanford University · Harvard University

  10. Evaluating Agentic Bioinformatics through Function, Evidence, and Validation

    Jul 30, 2026Phuc Pham, Truong-Son HyBioinformaticsAgentic Workflows

    Department of Computer Science, The University of Alabama at Birmingham, USA

  11. Plato-Bio: verification-first biological novelty screening with temporal rediscovery and structural benchmarks

    Jul 27, 2026Stefan G. CreadoreBioinformaticsGeneration Provenance

    Praxa Labs, an independent open-source research initiative, United States

  12. Non--negative matrix factorization using the \textit{R} package \textsf{nnmf}

    Jul 22, 2026Volkan Sevinç, Nikolas Kontemeniotis, Theodoros Perdikis +1Nonnegative Matrix FactorizationDimensionality Reduction

    Muğla Sıtkı Koçman University, Faculty of Science, Department of Statistics, Kötekli Kampüsü, Muğla, Türkiye · Department of Economics, University of Crete, Gallos Campus, Rethimno, Greece · Department of Tourism Studies, University of Piraeus, Piraeus, Greece +1

  13. Prompt-to-Paper: Agentic AI System for Bioinformatics

    Jul 5, 2026Ramsha Kamran, Maheera Amjad, Zartasha Mustansar +3Bioinformatics

    School of Interdisciplinary Engineering and Sciences (SINES), National University of Sciences and Technology (NUST), Islamabad, Pakistan · College of Electrical and Mechanical Engineering (CEME), NUST, Rawalpindi, Pakistan

  14. A Self-Evolving Agentic System for Automated Generation and Execution of Biological Protocols

    Jun 30, 2026Yankai Jiang, Weiting Tang, Haoran Sun +11AutomatedSelf-Evolving Agents

    1Shanghai Artificial Intelligence Laboratory, Shanghai, China · 2Genoria AI, Shenzhen, China

  15. Process-Reward Tactic Evolution for Long-Horizon Bioinformatics Workflows

    Jun 18, 2026Lingzhi Yang, Yubo Fan, Song Wu +1BioinformaticsAgentic Workflow Design

    Stony Brook University · Vanderbilt University · Brookhaven National Lab

  16. MultiMolecule: a modular ecosystem for biomolecular sequence-model workflows

    Jun 15, 2026Zhiyuan ChenBioinformaticsIntermediate Checkpoints

    1*DanLing Team.

  17. Twelve quick tips for designing AI-driven HPC workflows

    Jun 5, 2026Jamie J. AlnasirHigh-Performance ComputingScientific Workflows

    Department of Computer Science Royal Holloway University of London Egham, England, UK

  18. Beyond Prompt-Based Planning: MCP-Native Graph Planning-based Biomedical Agent System

    Jun 3, 2026Zhangtianyi Chen, Florensia Widjaja, Wufei Dai +3Multi-Agent WorkflowsBioinformatics

    1The Chinese University of Hong Kong, Shenzhen

  19. TadA-Bench: A Million-Variant Benchmark for Future-Round Discovery Toward Agentic Protein Engineering

    May 29, 2026Jin Gao, Juntu Zhao, Zirui Zeng +5Protein DesignBioinformatics

    Shanghai Jiao Tong University · Shanghai Innovation Institute.

  20. The Montparnasse Algorithm for RNA Design

    May 25, 2026Tristan CazenaveMessenger RnaMolecular Optimization

    LAMSADE, Universit´e Paris Dauphine - PSL, Paris, France

  21. GenCircuit-RL: Reinforcement Learning from Hierarchical Verification for Genetic Circuit Design

    May 14, 2026Noah FlynnBioinformaticsCircuits

    University of California, Berkeley, CA, USA.

  22. OpenAaaS: An Open Agent-as-a-Service Framework for Distributed Materials-Informatics Research

    May 13, 2026Peng Kang, Bixuan Li, Xiaoya Huang +5Data-Driven Materials DiscoveryScientific Workflows

    National Key Laboratory of AI for Materials Science Beihang University Beijing, China · Tianmushan Laboratory Beihang University Beijing, China

  23. Biomedical systems biology workflow orchestration and execution with PoSyMed

    Apr 21, 2026Simon Süwer, Zoe Chervontseva, Kester Bagemihl +3BioinformaticsScientific Workflows

    Institute for Computational Systems Biomedicine, University of Hamburg, Hamburg, Germany · Department for Mathematics and Computer Science, University of Southern Denmark, Odense, Denmark · Faculty of Science, Computer Science, Vrije Universiteit Amsterdam, Amsterdam, Netherlands

  24. Do Papers Tell the Whole Story? A Benchmark and Framework for Uncovering Hidden Implementation Gaps in Bioinformatics

    Mar 23, 2026Tianxiang Xu, Xiaoyan Zhu, Xin Lai +4BioinformaticsCode Quality

    Xi’an Jiaotong University

  25. Supporting Workflow Reproducibility by Linking Bioinformatics Tools across Papers and Executable Code

    Mar 9, 2026Clémence Sebe, Olivier Ferret, Aurélie Névéol +3BioinformaticsAgentic Workflow Design

    Universit´e Paris-Saclay, CNRS, Laboratoire Interdisciplinaire des Sciences du Num´erique, 91400, Orsay, France · Universit´e Paris-Saclay, CEA, List, F-91120, Palaiseau, France · Department of Computer Science, Humboldt-Universität zu Berlin, 10099, Berlin, Germany +1