Causal Attention

Block discrete diffusion language models factorize a sequence autoregressively over fixed-size positional blocks, decoupling within-block parallel denoising from across-block conditioning. We argue that this rigid partition wastes structure already present in the sequence: blocks defined by position rather than by content separate semantically coherent tokens and group unrelated ones together. We introduce the \textbf{D}ynamic \textbf{C}hunking \textbf{D}iffusion \textbf{M}odel (DCDM), which replaces positional blocks with content-defined semantic chunks. At its core is Chunking Attention, a differentiable layer that routes tokens into $K$ clusters parameterized by learnable subspaces and shaped end-to-end by the diffusion objective. The resulting cluster assignments induce a chunk-causal attention mask under which a discrete diffusion denoiser factorizes the sequence likelihood autoregressively over semantic chunks, strictly generalizing block discrete diffusion. On downstream benchmarks at parameter scales up to 1.5B, DCDM consistently improves over both unstructured and positional-block diffusion baselines, with the advantage stable across scales and visible early in training.

When adapting an encoder to a new domain, the standard approach is to continue training with Masked Language Modeling (MLM). We show that temporarily switching to Causal Language Modeling (CLM) followed by a short MLM decay improves downstream performance. On biomedical texts with ModernBERT, this CLM detour outperforms MLM baselines trained on identical data and compute across 8 French and 11 English biomedical tasks, by +1.2-2.8pp and +0.3-0.8pp respectively, depending on model size. We investigate the reasons for these gains. We find that CLM's dense supervision impacts low transformer layers (0-7) far more than MLM does. Freezing low layers during CLM eliminates the downstream benefit; freezing mid layers preserves it. The representational changes persist through the MLM decay phase, even when it matches the CLM phase in length, and they scale with model capacity. We release ModernCamemBERT-bio and ModernBERT-bio as state-of-the-art biomedical encoders in Base and Large sizes.

Encoder-decoder models offer substantial inference-time savings over decoder-only models, but their pretraining objectives suffer from sparse supervision and dynamic sequence lengths, keeping them out of practice at scale. We propose block-based double decoders, a novel transformer architecture that utilizes doubly-causal block-based attention masks to train with full loss supervision and static sequence packing, combining decoder-only training efficiency with encoder-decoder inference efficiency. In scaling law experiments, block-based double decoders strongly outperform encoder-decoders and closely track decoder-only models across scales. At inference time, they cut KV-cache memory and per-token compute by at least 2/3 without sacrificing prefill caching or other existing inference optimizations available to decoder-only models.

We study causal self-attention dynamics -- a toy model for decoder Transformers -- which we interpret as a non-exchangeable interacting particle system. Adapting cumulant expansions to the triangular causal dependency structure of the model, and appealing to non-hierarchical methods to estimate correlations using Glauber calculus, we prove a quantitative mean-field limit result and a next-order characterization of correlations. For iid uniformly distributed tokens, the limiting correlation equation can be solved in closed form and we obtain a rigorous explanation of the empirically observed \emph{lost-in-the-middle} phenomenon: the token retrieval profile, as a function of the source position in the prompt, is $\mathsf{U}$-shaped, with primacy, recency, and a unique interior minimum under an explicit smallness condition.

Leveraging deep learning for causal discovery in time series remains challenging because existing neural methods predominantly rely on component-wise architectures that fail to capture shared system dynamics or employ decoupled post-hoc graph extraction that risks overfitting to spurious correlations. We propose $\textbf{Mask2Cause}$, an end-to-end framework that recovers the underlying causal graph directly during the forecasting forward pass. Our approach introduces an Inverted Variable Embedding and an Adjacency-Constrained Masked Attention mechanism, trained with homoscedastic or heteroscedastic objectives to capture causal influences in both mean and variance. Empirical results on diverse benchmarks, from synthetic chaotic dynamics to realistic biological simulations, demonstrate state-of-the-art causal discovery with significantly reduced parameter complexity compared to standard baselines. We further show that inferred causal structures can be used to reduce parameter count of forecasting models by more than 70% on average while maintaining predictive accuracy.

We introduce Arrow, a foundation model for zero-shot causal discovery on observational tabular data. Arrow factorizes a directed acyclic graph into an undirected skeleton and a topological order, guaranteeing acyclicity by construction. Given a new dataset, it uses a transformer-based architecture to contextualize variables within and across observations, then predicts skeleton edge probabilities and node order scores that together define a graph. Arrow is trained in a supervised fashion on synthetic datasets with ground-truth graphs, using an end-to-end differentiable directed edge composite likelihood induced by the skeleton-order factorization. The training distribution spans diverse graph families, functional forms, noise models, and dataset shapes. Across in- and out-of-distribution synthetic, semi-synthetic, and real datasets, Arrow matches or outperforms existing causal discovery methods at substantially lower inference cost than competitive alternatives. Our results demonstrate that large-scale pretraining on diverse synthetic data can yield zero-shot causal discovery models that are fast, accurate, and reusable on new datasets.

Causal abstraction offers a principled framework for mechanistic interpretability, aligning a high-level causal model with the low-level computation realized by a neural network through counterfactual intervention analysis. Existing methods such as distributed alignment search (DAS) learn expressive subspace interventions, but the relevant neural site is unknown a priori, so finding a handle requires a computationally burdensome search over candidate sites. We introduce PLOT (Progressive Localization via Optimal Transport), a transport-based framework that localizes causal variables from the output effect geometry of abstract and neural interventions. PLOT fits an optimal transport coupling between abstract variables and candidate neural sites, yielding a global soft correspondence that can be calibrated into intervention handles. In simple settings, a single coupling over individual neurons suffices. In larger models, PLOT is applied progressively, moving from coarse sites such as tokens, timesteps, or layers to finer supports such as coordinate groups or PCA spans, and optionally guiding DAS based on the localized signal. Across experiments of increasing complexity, transport-only PLOT handles are exceedingly fast and competitive on accuracy, while PLOT-guided DAS reaches DAS-level accuracy at a fraction of full DAS runtime, providing an efficient localization engine for causal abstraction research at scale.

World Action Models (WAMs) have recently emerged as a promising paradigm for robotic manipulation by jointly predicting future visual observations and future actions. However, current WAMs typically execute a fixed number of predicted actions after each model inference, leaving the robot blind to whether the imagined future remains consistent with the actual physical rollout. In this work, we formulate adaptive WAM execution as a future-reality verification problem: the robot should execute longer when the WAM-predicted future remains reliable, and replan earlier when reality deviates from imagination. To this end, we propose Future Forward Dynamics Causal Attention (FFDC), a lightweight verifier that jointly reasons over predicted future actions, predicted visual dynamics, real observations, and language instructions to estimate whether the remaining action rollout can still be trusted. FFDC enables adaptive action chunk sizes as an emergent consequence of prediction-observation consistency, preserving the efficiency of long-horizon execution while restoring responsiveness in contact-rich or difficult phases. We further introduce Mixture-of-Horizon Training to improve long-horizon trajectory coverage for adaptive execution. Experiments on the RoboTwin benchmark and in the real world demonstrate that our method achieves a strong robustness-efficiency trade-off: on RoboTwin, it reduces WAM forward passes by 69.10% and execution time by 34.02%, while improving success rate by 2.54% over the short-chunk baseline; in real-world experiments, it improves success rate by 35%.

Standard fine-tuning of transformer models on causal reasoning tasks leads to catastrophic model collapse, where models learn trivial solutions such as always predicting "Yes" or "No" regardless of input structure. We demonstrate that fine-tuning Gemma 270M on transitivity and d-separation tasks without semantic loss results in 100% collapse rate, with models achieving misleadingly high accuracy (73.9%) while learning no causal reasoning. We propose a semantic loss function with graph-based logical constraints and dynamic lambda scheduling that prevents this collapse. Our approach achieves 70.4% accuracy on transitivity tasks and 68.6% on d-separation tasks with stable, context-dependent predictions, representing a 42.7% improvement over collapsed baselines. Adversarial evaluation on 1,000 structural reasoning samples shows semantic models achieve 67-70% accuracy while collapsed models fail catastrophically at 43-71%. We validate our findings through comprehensive benchmarking on 200,000+ evaluation samples across five model variants, demonstrating that semantic loss is essential and not optional, for stable causal reasoning in transformers.

The scalability of Large Language Models to long sequences is hindered by the quadratic cost of attention and the limitations of positional encodings. To address these, we introduce Caracal, a novel architecture that replaces attention with a parameter-efficient, O(L log(L)) Multi-Head Fourier (MHF) module. Our contributions are threefold: (1) We leverage the Fast Fourier Transform (FFT) for sequence mixing, inherently addressing both bottlenecks mentioned above. (2) We apply a frequency-domain causal masking technique that enforces autoregressive capabilities via asymmetric padding and truncation, overcoming a critical barrier for Fourier-based generative models. (3) Unlike efficient models relying on hardware-specific implementations (e.g., Mamba), we uses standard library operators. This ensures robust portability, eliminating common deployment barriers. Evaluations demonstrate that Caracal performs competitively with Transformer and SSM baselines, offering a scalable and simple pathway for efficient long-sequence modeling. Code is available in Appendix.

Causal effect estimation from observational data requires careful adjustment for confounding. Classical estimators such as inverse probability weighting and augmented inverse probability weighting are effective under favorable model specification, but may become unstable when treatment assignment and outcome mechanisms are complex, non-linear, and high-dimensional. Machine learning and representation learning approaches improve flexibility, yet joint training can allow outcome-related information to influence treatment-side representations, which is undesirable from a causal perspective. We propose MOCA (Modular One-way Causal Attention), a transformer-based framework that separates treatment and outcome modeling through a modular design, and performs confounder adjustment using a one-way attention mechanism. A cutting-feedback strategy, implemented via gradient detachment, prevents the outcome loss from updating the treatment module. This design preserves directional information flow while retaining the representational power of transformer architectures for causal inference. Across multiple simulated scenarios, including linear, nonlinear, heavy-tailed, hidden confounding, and high-dimensional settings, MOCA shows competitive or improved performance relative to IPW, AIPW, X-learner, TARNet, and DragonNet. We further illustrate the method on the Infant Health and Development Program dataset and the Dehejia-Wahba dataset as real-world benchmarks. These results suggest that modular attention with one-way information flow provides a promising and interpretable direction for causal inference with modern deep learning models.

Accurate early prediction of Acute Kidney Injury (AKI) is critical for timely clinical intervention. However, existing deep learning models struggle with irregularly sampled data and suffer from the opaque "black-box" nature of sequential architectures, strictly limiting clinical trust. To address these challenges, we propose CT-Former, integrating continuous-time modeling with a Causal-Transformer. To handle data irregularity without biased artificial imputation, our framework utilizes a continuous-time state evolution mechanism to naturally track patient temporal trajectories. To resolve the black-box problem, our Causal-Attention module abandons uninterpretable hidden state aggregation. Instead, it generates a directed structural causal matrix to identify and trace the exact historical onset of severe physiological shocks. By establishing clear causal pathways between historical anomalies and current risk predictions, CT-Former provides native clinical interpretability. Training follows a decoupled two-stage protocol to optimize the causal-fusion process independently. Extensive experiments on the MIMIC-IV cohort (N=18,419) demonstrate that CT-Former significantly outperforms state-of-the-art baselines. The results confirm that our explicitly transparent architecture offers an accurate and trustworthy tool for clinical decision-making.

Synthetic tabular data generation addresses data scarcity and privacy constraints in a variety of domains. Tabular Prior-Data Fitted Network (TabPFN), a recent foundation model for tabular data, has been shown capable of generating high-quality synthetic tabular data. However, TabPFN is autoregressive: features are generated sequentially by conditioning on the previous ones, depending on the order in which they appear in the input data. We demonstrate that when the feature order conflicts with causal structure, the model produces spurious correlations that impair its ability to generate synthetic data and preserve causal effects. We address this limitation by integrating causal structure into TabPFN's generation process through two complementary approaches: Directed Acyclic Graph (DAG)-aware conditioning, which samples each variable given its causal parents, and a partially directed acyclic graph (PDAG)-based strategy for scenarios with partial causal knowledge. We evaluate these approaches on controlled benchmarks and six CSuite datasets, assessing structural fidelity, distributional quality, and Average Treatment Effect (ATE) preservation. Across most settings, DAG-aware conditioning improves the quality and stability of synthetic data relative to vanilla TabPFN. Under partial causal knowledge, the oracle partially directed acyclic graph (oracle-PDAG), which orients only the edges into the colliders, shows moderate gains, while the benefit of a Completed Partially Directed Acyclic Graph (CPDAG) discovered from data depends on how well the causal structure is recovered. These results indicate that reliable causal structure, even partial, can be injected into TabPFN at inference time, without parameter updates, to improve synthetic data quality.

Estimating causal quantities traditionally relies on bespoke estimators tailored to specific assumptions. Recently proposed Causal Foundation Models (CFMs) promise a more unified approach by amortising causal discovery and inference in a single step. However, in their current state, they do not allow for the incorporation of any domain knowledge, which can lead to suboptimal predictions. We bridge this gap by introducing methods to condition CFMs on causal information, such as the causal graph or more readily available ancestral information. When access to complete causal graph information is too strict a requirement, our approach also effectively leverages partial causal information. We systematically evaluate conditioning strategies and find that injecting learnable biases into the attention mechanism, together with a graph-convolutional encoder, is a highly effective method to utilise full and partial causal information. Our experiments show that this conditioning allows a general-purpose CFM to match the performance of specialised models trained on specific causal structures. Overall, our approach addresses a central hurdle on the path towards all-in-one causal foundation models: the capability to answer causal queries in a data-driven manner while effectively leveraging any amount of domain expertise.

Causal discovery is essential for advancing data-driven fields such as scientific AI and data analysis, yet existing approaches face significant time- and space-efficiency bottlenecks when scaling to large graphs. To address this challenge, we present CauScale, a neural architecture designed for efficient causal discovery that scales inference to graphs with up to 1000 nodes. CauScale improves time efficiency via a reduction unit that compresses data embeddings and improves space efficiency by adopting tied attention weights to avoid maintaining axis-specific attention maps. To keep high causal discovery accuracy, CauScale adopts a two-stream design: a data stream extracts relational evidence from high-dimensional observations, while a graph stream integrates statistical graph priors and preserves key structural signals. CauScale successfully scales to 500-node graphs during training, where prior work fails due to space limitations. Across testing data with varying graph scales and causal mechanisms, CauScale achieves 99.6% mAP on in-distribution data and 84.4% on out-of-distribution data, while delivering 4-13,000 times inference speedups over prior methods. Our project page is at https://github.com/OpenCausaLab/CauScale.

Temporal causal representation learning methods assume that causal mechanisms switch instantaneously between discrete domains, yet real-world systems often exhibit continuous mechanism transitions. For example, a vehicle's dynamics evolve gradually through a turning maneuver, and human gait shifts smoothly from walking to running. We formalize this setting by modeling transitional mechanisms as convex combinations of finitely many atomic mechanisms, governed by time-varying mixing coefficients. Our theoretical contributions establish that both the latent causal variables and the continuous mixing trajectory are jointly identifiable. We further propose TRACE, a Mixture-of-Experts framework where each expert learns one atomic mechanism during training, enabling recovery of mechanism trajectories at test time. This formulation generalizes to intermediate mechanism states never observed during training. Experiments on synthetic and real-world data demonstrate that TRACE recovers mixing trajectories with up to 0.99 correlation, substantially outperforming discrete-switching baselines.

Autoregressive video diffusion models hold promise for world simulation but are vulnerable to exposure bias arising from the train-test mismatch. While recent works address this via post-training, they typically rely on a bidirectional teacher model or discriminator. To achieve an end-to-end solution, we introduce Resampling Forcing, a teacher-free framework that enables training autoregressive video models from scratch and at scale. Central to our approach is a self-resampling scheme that simulates inference-time model errors on history frames during training. Conditioned on these degraded histories, a sparse causal mask enforces temporal causality while enabling parallel training with frame-level diffusion loss. To facilitate efficient long-horizon generation, we further introduce history routing, a parameter-free mechanism that dynamically retrieves the top-k most relevant history frames for each query. Experiments demonstrate that our approach achieves performance comparable to distillation-based baselines while exhibiting superior temporal consistency on longer videos owing to native-length training.

Masked Discrete Diffusion Models (MDMs) have achieved strong performance across a wide range of multimodal tasks, including image understanding, generation, and editing. However, their inference speed remains suboptimal due to the need to repeatedly process redundant masked tokens at every sampling step. In this work, we propose Sparse-LaViDa, a novel modeling framework that dynamically truncates unnecessary masked tokens at each inference step to accelerate MDM sampling. To preserve generation quality, we introduce specialized register tokens that serve as compact representations for the truncated tokens. Furthermore, to ensure consistency between training and inference, we design a specialized attention mask that faithfully matches the truncated sampling procedure during training. Built upon the state-of-the-art unified MDM LaViDa-O, Sparse-LaViDa achieves up to a 2x speedup across diverse tasks including text-to-image generation, image editing, and mathematical reasoning, while maintaining generation quality.

Detecting fraudulent credit card transactions remains a significant challenge, due to the extreme class imbalance in real-world data and the often subtle patterns that separate fraud from legitimate activity. Existing research commonly attempts to address this by generating synthetic samples for the minority class using approaches such as GANs, VAEs (Variational Autoencoders), or hybrid generative models. However, these techniques, particularly when applied only to minority-class data, tend to result in overconfident classifiers and poor latent cluster separation, ultimately limiting real-world detection performance. In this study, we propose the Causal Prototype Attention Classifier (CPAC), an interpretable architecture that promotes class-aware clustering and improved latent space structure through prototype-based attention mechanisms and we couple it with the encoder of a Variational Autoencoder-Generative Adversarial Network (VAE-GAN) in order to achieve improved latent cluster separation moving beyond post-hoc sample augmentation. We compared CPAC-augmented models to traditional oversamplers, such as SMOTE, as well as to state-of-the-art generative models, both with and without CPAC-based latent classifiers. Our results show that classifier-guided latent shaping with CPAC delivers superior performance, achieving an F1-score of 93.74% and recall of 92.85%, along with improved latent cluster separation. Further ablation studies and visualizations provide deeper insight into the benefits and limitations of classifier-driven representation learning for fraud detection. The codebase for this work can be found at the following link: https://github.com/claudiunderthehood/VAEGAN-CPAC.git.