Forest Remote Sensing

Synthetic Aperture Imaging (SAI) enables drones to observe forest canopies by warping and averaging multiple displaced views at a common depth. However, occlusion is suppressed rather than eliminated, causing poorly observed regions to appear occupied and leading to systematic biomass overestimation. The Deep Forest project cannot distinguish reconstruction artifacts from real vegetation because its training data relies on measured reflectance points, excluding empty space and preventing the network from learning explicit occupancy boundaries. This thesis addresses the problem by modifying training labels rather than the imaging process. Each simulated scene is rendered twice: as a 9x9 grid of top-down captures for focal-stack generation and as 550 depth-clipped slabs derived from scene geometry to provide occupancy labels, explicitly representing void space as a negative class. A Gazebo pipeline generates procedural forest stands containing 80-200 trees across three species. A pretrained Pix2Pix model translates rendered RGB images into a synthetic near-infrared band, and Light Field Rendering produces aligned focal stacks of 550 planes across three channels. Four architectures were evaluated on a held-out scene. The plain 2D U-Net achieved an IoU of 0.6290, outperforming the volumetric 3D U-Net (0.5707). Established reconstruction methods performed substantially worse: COLMAP achieved 0.3446 and DepthAnything3 0.2959, both after their respective optimal dilation sweeps. An RGB-input variant of the volumetric architecture achieved the highest IoU of 0.6514 without dilation or per-scene calibration. These results highlight the limitations of conventional reconstruction methods, which recover visible surfaces but struggle to infer occupancy within closed canopies.

Human-labeled data are widely used as reference annotations in ML, despite known variability across annotators in many expert-driven domains. In addition, expert annotation is slow, inconsistent, and remains a major bottleneck for scaling tasks like tree height bias classification in forestry remote sensing. We propose a multi-agent system (MAS) that orchestrates expert decision trees with Vision-Language Models (VLMs), treating the decision tree as a structural prior while VLMs perform localized semantic perception at individual nodes, with multi-agent voting to mitigate VLM stochasticity. We formalize a Decoupled Declarative Decision (D3) Framework that enables zero-modification generalization across diverse expert-defined decision structures. On a tree bias classification testbed, our framework outperforms supervised ML baselines and reduces the amount of expert labeling effort required. These results suggest that agentic orchestration of VLMs with expert priors can reproduce expert-defined labeling procedures at substantially lower annotation cost while maintaining interpretability.

Forest imagery analysis often involves multiple tightly coupled vision tasks, which must be performed under substantial variation in geographic regions, sensors, and acquisition conditions. However, practitioners often lack a unified tool that is geospatial-native, cloud-optimized, and ML-integrated for end-to-end workflows spanning annotation, prediction, visualization, and downstream analysis at scale. We present AwakeForest, an interactive end-to-end platform designed for large-scale forest imagery that integrates model-assisted inference, automatic annotation, and human-in-the-loop refinement within a single workflow. Our platform supports plug-and-play integration of pretrained models and enables scalable interaction with forest imagery ranging from standard aerial scenes to large orthomosaics that can span several gigabytes to hundreds of gigabytes. AwakeForest produces analysis-ready outputs that can be directly used for downstream analysis and to support iterative model and annotation updates on new scenes. We demonstrate the system on the PALMS dataset and illustrate how AwakeForest supports an end-to-end workflow for practical forest management and analysis.

Forests worldwide are increasingly threatened by climate change and disturbances such as fire, pests, and pathogens, creating a need for scalable monitoring of tree cover and tree mortality. Aerial imagery from drones and aircraft enables detailed mapping of tree crowns and mortality, but progress is limited by the lack of globally distributed, multi-biome, harmonized datasets for joint segmentation of tree cover and mortality. To address this, we introduce two open, machine-learning-ready datasets for joint segmentation of tree cover and tree mortality from centimeter-scale aerial imagery across globally distributed sites. Our training dataset, DTE-aerial-train, comprises 346K image patches of $1024 \times 1024$ pixels at spatial resolutions from 2.5 to 20,cm, with audited pseudo-labels for tree cover and mortality and expert annotations for rare mortality sites. Our evaluation dataset, DTE-aerial-bench, is a multi-biome, multi-resolution benchmark of 25 globally distributed orthoimages (525 patches) with expert annotations for both tree cover and mortality. Both datasets span tropical, temperate, boreal, and dryland biomes and cover a wide range of forest structures and mortality patterns. Using the benchmark, we establish reference baselines for mortality and tree cover segmentation across biomes and spatial resolutions. Improvements over prior models vary by biome: they are largest in boreal and montane forests (F1 from 0.40 to 0.58) and smaller in tropical forests and drylands. For data, model and code, please visit our project page. An interactive visualization of the benchmark dataset is also available at our release page.

Accurate quantification of forest coverage and combustible biomass (fuel load) is critical for wildfire risk assessment and ecosystem management. However, traditional methods relying on airborne LiDAR or field surveys are cost-prohibitive and time-intensive, while satellite imagery often lacks the vertical resolution required for canopy volume analysis. This paper proposes a novel, automated pipeline for rapid forest inventory using virtual remote sensing data derived from Google Earth Studio (GES). Our approach first generates low-altitude orbital imagery and camera poses for a target region. For dense 3D reconstruction, we employ Pi-Long, developed within the VGGT-Long framework. This model serves as a scalable extension of the Pi-3 feed-forward Transformer architecture. To address the inherent scale ambiguity in monocular reconstruction, we introduce a metric recovery module that aligns the reconstructed trajectory with GES ground truth poses via Sim(3) Umeyama optimization. The metric-scale point cloud is then orthogonally projected into Bird's-Eye-View (BEV) height and density maps. Finally, we employ a watershed-based segmentation algorithm combined with height variance analysis to classify tree species (conifer vs. broadleaf), calculate Leaf Area Index (LAI), and estimate total fuel load. Experimental results demonstrate that this pipeline offers a scalable, cost-effective alternative to physical scanning, enabling near-real-time estimation of forest biomass with high geometric consistency.

The shift from stand-level to individual-tree-level forest assessments supports improved species mapping and biodiversity monitoring, particularly in boreal ecosystems where tree species like aspen (Populus tremula L.) play a keystone role. Airborne laser scanning (ALS) is the standard for such inventories, but a major limitation for developing improved species classification methods is the small number of publicly available ALS datasets containing high-quality, field-validated reference data. Recently, multispectral ALS data has shown promise for tree species classification, but the progress is hindered by the lack of open multispectral ALS datasets with high-quality field reference data. This paper presents and details an open multispectral ALS dataset for tree species classification that was used before its public release for an international benchmarking study of machine learning and deep learning classification methods in a related publication by Taher et al.,(2026). The dataset comprises 6326 segment-level point clouds of individual trees representing nine species in southern Finland. The point cloud data has been acquired using two multispectral laser scanning systems each operating at three laser wavelengths: a helicopter-borne system (HeliALS) with a point density exceeding 1000 points\m2 and an Optech Titan system with approximately 35 points\m2. Furthermore, we present a crowdsourcing application that facilitates the collection of high-quality field reference data of tree species in an efficient and scalable manner. Our article showcases the versatility of the open dataset by presenting new analyses on species classification using multispectral data building upon the initial findings of Taher et al.,(2026).

We present a curated multi-platform LiDAR reference dataset from an instrumented ICOS forest plot, explicitly designed to support calibration, benchmarking, and integration of 3D structural data with ecological observations and standard allometric models. The dataset integrates UAV-borne laser scanning (ULS) to measure canopy coverage, terrestrial laser scanning (TLS) for detailed stem mapping, and backpack mobile laser scanning (MLS) with real-time SLAM for efficient sub-canopy acquisition. We focus on the control plot with the most complete and internally consistent registration, where TLS point clouds (~333 million points) are complemented by ULS and MLS data capturing canopy and understory strata. Marker-free, SLAM-aware protocols were used to reduce field and processing time, while manual and automated methods were combined. Final products are available in LAZ and E57 formats with UTM coordinates, together with registration reports for reproducibility. The dataset provides a benchmark for testing registration methods, evaluating scanning efficiency, and linking point clouds with segmentation, quantitative structure models, and allometric biomass estimation. By situating the acquisitions at a long-term ICOS site, it is explicitly linked to 3D structure with decades of ecological and flux measurements. More broadly, it illustrates how TLS, MLS, and ULS can be combined for repeated inventories and digital twins of forest ecosystems.

High-resolution mapping of canopy height is essential for forest management and biodiversity monitoring. Although recent studies have led to the advent of deep learning methods using satellite imagery to predict height maps, these approaches often face a trade-off between data accessibility and spatial resolution. To overcome these limitations, we present SERA-H, an end-to-end model combining a super-resolution module (EDSR) and temporal attention encoding (UTAE). Trained under the supervision of high-density LiDAR-derived Canopy Height Models (CHM), our model generates 2.5 m resolution height maps from freely available Sentinel-1 and Sentinel-2 (10 m) time series data. Evaluated against an open-source benchmark dataset in France, SERA-H, with a MAE of 2.6 m and R2 of 0.82, not only outperforms standard Sentinel-1/2 baselines but also approaches the accuracy of methods based on commercial very high-resolution imagery (e.g., SPOT-6/7), while relying solely on freely available data. These results demonstrate that combining high-resolution ALS supervision with the spatio-temporal information embedded in Sentinel time series enables the reconstruction of spatial detail finer than the native resolution of the input imagery. By approaching the accuracy of costly commercial imagery, SERA-H opens the possibility of mapping temperate forests using publicly available data with high revisit frequency.