Hypergraph Learning

Sensor networks increasingly govern modern infrastructure, yet the data they lose are rarely missing in the uniform-random patterns assumed by standard imputation benchmarks. Loop detectors go offline during calibration, roadside cabinets silence clusters of nearby sensors, and newly installed instruments provide no history. Such failures create structured absences whose values are constrained by higher-order relations among groups of sensors, not merely by pairwise proximity. Existing low-rank and graph-based methods often miss this collective structure and can fail when missingness becomes coherent. We introduce Multi-Scale Hypergraph Laplacians (MSHL), a two-stage framework for learning higher-order structure from incomplete spatiotemporal observations. The Discovery stage builds a multi-scale hypergraph from complementary topology and residual-correlation evidence, with an observation-only selector that adapts to the supported interaction scale. The Refinement stage adds a small hypergraph-conditioned residual network that is safe by construction: it learns nonlinear corrections where informative residual features exist and defers to the linear estimate where they do not. We prove that MSHL represents group-conservation patterns inaccessible to pairwise graph priors, adapts to the best fixed scale up to a logarithmic factor, transfers this advantage to held-out imputation error, and admits a one-sided refinement guarantee. On two real traffic networks evaluated across scattered cell missingness, contiguous block outages, and whole-sensor blackouts at five rates, MSHL improves over a pairwise-graph baseline whenever higher-order structure is identifiable and otherwise matches it within sampling noise. The results point to a broader principle for reliable infrastructure learning: missing data should be treated not as isolated entries to fill, but as evidence of structure to discover.

Hypergraphs provide a principled framework for modeling polyadic interactions, with applications in recommendation systems, social networks, and molecular modeling. Hypergraph generation remains challenging because incidence structures are discrete, sparse, and governed by heterogeneous higher-order interactions. Existing generators often rely on implicit latent spaces or continuous incidence decoders, which provide limited mechanistic interpretation of how node-hyperedge incidences arise. To address these limitations, we propose HYVINT, an intensity-driven hypergraph generative framework. Our key innovations are twofold: (i) we develop an intensity-driven incidence formation mechanism for hypergraphs that links latent interaction strength to binary incidence, and (ii) we derive a tractable lower-bound variational estimator for learning latent representations. We provide generation error bounds with asymptotic convergence rates and empirically show that HYVINT achieves strong fidelity while maintaining substantial novelty and diversity on synthetic and real-world hypergraphs.

Hypergraphs model higher-order relations that drive real-world decisions, from drug prescriptions to recommendations. A central structural signal in such data, beyond what pairwise relations can express, is interaction compositionality: whether a higher-order relation is compositional, emergent, or inhibitory with respect to its observed or unobserved sets. In polypharmacy, the regime decides whether a drug should be dropped, kept, or excluded: a compositional drug triple can be safely simplified, an emergent triple requires all drugs jointly, and an inhibitory triple flags a drug that disrupts an existing interaction. However, existing hypergraph learning methods, which merely propagate messages over observed hyperedges, leave this compositional signal unmodeled, allowing dangerous drug combinations to slip through and be misclassified. To this end, we propose the Hypergraph Pattern Machine (HGPM), shifting the paradigm from message passing to learning the compositional pattern of subsets. It tokenizes compositional subsets, organizes them in an inclusion DAG, and trains an inclusion-aware Transformer under masked reconstruction. On ten hypergraph benchmarks, HGPM matches or exceeds state-of-the-art methods. Notably, in a real adverse-event prediction case, HGPM correctly identifies the drug addition that inhibits the side effect among feature-identical candidates, a discrimination existing methods cannot make. The code and data are in https://github.com/KryieZhao/HGPM.git.

Hypergraphs model higher-order interactions, but realistic hypergraph generation remains difficult because incidence, hyperedge-size heterogeneity, and overlap structure are not faithfully captured by pairwise reductions. We propose \HEDGE, a generative model defined directly on relaxed incidence matrices via a structured stochastic diffusion. The forward process combines a hypergraph-specific two-sided heat operator with an Ornstein--Uhlenbeck component, preserving structure-aware noising near the data while yielding an explicit Gaussian terminal law. Conditional on an observed hypergraph, this forward process is linear-Gaussian, so conditional means, covariances, scores, and reverse-drift targets are available in closed form. We therefore learn a permutation-equivariant state-only reverse-drift field in incidence space by regressing onto exact conditional targets, and generate samples by simulating a learned reverse-time SDE from the Gaussian base law. We establish exactness in the ideal state-only setting together with finite-horizon stability guarantees, and empirically show improved hypergraph generation quality relative to strong baselines.

Root cause localization in cloud native microservice systems requires modeling complex service dependencies, irregular temporal dynamics, and heterogeneous observability data. We present HyperODE RCA, a unified framework that combines hypergraph attention learning, latent ordinary differential equations, and multimodal cross attention fusion for fine grained root cause analysis. The method learns higher order service interactions through differentiable hyperedge construction, captures continuous anomaly evolution from irregular observations with an ODE RNN encoder, and adaptively fuses logs, traces, metrics, entities, and events using context aware modality routing. We further improve robustness with a variational information bottleneck, temporal causal regularization, and invariant risk constraints. Experiments on the Tianchi AIOps benchmark show clear gains over strong baselines in ranking and classification performance, while preserving interpretability through learned hypergraph attention.

Implicit spatial relations and deep semantic structures encoded in object attributes are crucial for procedural planning in embodied AI systems. However, existing approaches often over rely on the reasoning capabilities of vision language models (VLMs) themselves, while overlooking the rich structured semantic information that can be mined from multimodal inputs. As a result, models struggle to effectively understand functional spatial relationships in complex scenes. To fully exploit implicit spatial relations and deep semantic structures in multimodal data, we propose GaLa, a vision language framework for multimodal procedural planning. GaLa introduces a hypergraph-based representation, where object instances in the image are modeled as nodes, and region-level hyperedges are constructed by aggregating objects according to their attributes and functional semantics. This design explicitly captures implicit semantic relations among objects as well as the hierarchical organization of functional regions. Furthermore, we design a TriView HyperGraph Encoder that enforces semantic consistency across the node view, area view, and node area association view via contrastive learning, enabling hypergraph semantics to be more effectively injected into downstream VLM reasoning. Extensive experiments on the ActPlan1K and ALFRED benchmarks demonstrate that GaLa significantly outperforms existing methods in terms of execution success rate, LCS, and planning correctness.

Large Vision-Language Models (LVLMs) consistently require new arenas to guide their expanding boundaries, yet their capabilities with hypergraphs remain unexplored. In the real world, hypergraphs have significant practical applications in areas such as life sciences and social communities. Recent advancements in LVLMs have shown promise in understanding complex topologies, yet there remains a lack of a benchmark to delineate the capabilities of LVLMs with hypergraphs, leaving the boundaries of their abilities unclear. To fill this gap, in this paper, we introduce $\texttt{HyperGVL}$, the first benchmark to evaluate the proficiency of LVLMs in hypergraph understanding and reasoning. $\texttt{HyperGVL}$ provides a comprehensive assessment of 12 advanced LVLMs across 84,000 vision-language question-answering (QA) samples spanning 12 tasks, ranging from basic component counting to complex NP-hard problem reasoning. The involved hypergraphs contain multiscale synthetic structures and real-world citation and protein networks. Moreover, we examine the effects of 12 textual and visual hypergraph representations and introduce a generalizable router $\texttt{WiseHyGR}$ that improves LVLMs in hypergraph via learning adaptive representations. We believe that this work is a step forward in connecting hypergraphs with LVLMs.

Online financial services constitute an essential component of contemporary web ecosystems, yet their openness introduces substantial exposure to fraud that harms vulnerable users and weakens trust in digital finance. Such threats have become a significant web harm that erodes societal fairness and affects the well-being of online communities. However, existing detection methods based on graph neural networks (GNNs) struggle with two persistent challenges: (1) long-tailed data distributions, which obscure rare but critical fraudulent cases, and (2) fraud camouflage, where malicious transactions mimic benign behaviors to evade detection. To fill these gaps, we propose HIMVH, a Hippocampus-Inspired Multi-View Hypergraph learning model for web finance fraud detection. Specifically, drawing inspiration from the scene conflict monitoring role of the hippocampus, we design a cross-view inconsistency perception module that captures subtle discrepancies and behavioral heterogeneity across multiple transaction views. This module enables the model to identify subtle cross-view conflicts for detecting online camouflaged fraudulent behaviors. Furthermore, inspired by the match-mismatch novelty detection mechanism of the CA1 region, we introduce a novelty-aware hypergraph learning module that measures feature deviations from neighborhood expectations and adaptively reweights messages, thereby enhancing sensitivity to online rare fraud patterns in the long-tailed settings. Extensive experiments on six web-based financial fraud datasets demonstrate that HIMVH achieves 6.42% improvement in AUC, 9.74% in F1 and 39.14% in AP on average over 15 SOTA models.

Estimating node importance in heterogeneous knowledge graphs is a fundamental problem underlying recommendation, search, and knowledge decision systems. However, most existing methods rely on pairwise message passing mechanisms that fail to capture higher-order interactions induced by meta-relational structures. Furthermore, structural topology and semantic attributes are typically entangled within a unified embedding space, which obscures their distinct inductive biases and limits the discriminative capacity of learned importance representations. To address these limitations, we propose DualHNIE, a principled dual-channel hypergraph learning framework for node importance estimation. DualHNIE first constructs a higher-order knowledge graph by forming typed hyperedges from meta-path sequences, enabling explicit modeling of higher-order relational patterns. It then introduces two complementary encoders: a structure-aware hypergraph attention network that performs locally normalized aggregation over meta-path--induced hyperedges to capture localized structural dependencies, and a sparse--chunked hypergraph transformer that captures global semantic interactions while maintaining scalable computation. We further design a contrastive alignment mechanism with auxiliary supervision, ensuring cross-view consistency while preserving modality-specific representation. Extensive experiments on multiple benchmark datasets demonstrate that DualHNIE outperforms state-of-the-art methods, validating the effectiveness of explicit high-order modeling and disentangled dual-channel representation learning for heterogeneous knowledge graphs. Code and datasets are available\footnote[1]{https://github.com/jiawenchen10/DualHNIE}.