Masked Image Modeling

Masked image modeling (MIM) is a highly effective self-supervised learning (SSL) approach to extract useful feature representations from unannotated data. Predominantly used random masking methods make SSL less effective for medical images due to the contextual similarity of neighboring patches, leading to information leakage and SSL simplification. Hierarchical shifted window (Swin) transformer, a highly effective approach for medical images cannot use advanced masking methods as it lacks a global [CLS] token. Hence, we introduced an attention guided masking mechanism for Swin within a co-distillation learning framework to selectively mask semantically co-occurring and discriminative patches, to reduce information leakage and increase the difficulty of SSL pretraining. However, attention guided masking inevitably reduces the diversity of attention heads, which negatively impacts downstream task performance. To address this, we for the first time, integrate a noisy teacher into the co-distillation framework (termed DAGMaN) that performs attentive masking while preserving high attention head diversity. We demonstrate the capability of DAGMaN on multiple tasks including full- and few-shot lung nodule classification, immunotherapy outcome prediction, tumor segmentation, and unsupervised organs clustering.

Recent progress in vision-language pretraining has enabled significant improvements to many downstream computer vision applications, such as classification, retrieval, segmentation and depth prediction. However, a fundamental capability that these models still struggle with is aligning dense patch representations with text embeddings of corresponding concepts. In this work, we investigate this critical issue and propose novel techniques to enhance this capability in foundational vision-language models. First, we reveal that a patch-level distillation procedure significantly boosts dense patch-text alignment -- surprisingly, the patch-text alignment of the distilled student model strongly surpasses that of the teacher model. This observation inspires us to consider modifications to pretraining recipes, leading us to propose iBOT++, an upgrade to the commonly-used iBOT masked image objective, where unmasked tokens also contribute directly to the loss. This dramatically enhances patch-text alignment of pretrained models. Additionally, to improve vision-language pretraining efficiency and effectiveness, we modify the exponential moving average setup in the learning recipe, and introduce a caption sampling strategy to benefit from synthetic captions at different granularities. Combining these components, we develop TIPSv2, a new family of image-text encoder models suitable for a wide range of downstream applications. Through comprehensive experiments on 9 tasks and 20 datasets, we demonstrate strong performance, generally on par with or better than recent vision encoder models. Code and models are released via our project page at https://gdm-tipsv2.github.io/ .

Masked Image Modeling (MIM) has become a ubiquitous self-supervised vision paradigm. In this work, we show that MIM objectives cause the learned representations to retain non-semantic information, which ultimately hurts performance during inference. We introduce a model-agnostic score for semantic invariance using Principal Component Analysis (PCA) on real and synthetic non-semantic images. Based on this score, we propose a simple method, Semantically Orthogonal Artifact Projection (SOAP), to directly suppress non-semantic information in patch representations, leading to consistent improvements in zero-shot performance across various MIM-based models. SOAP is a post-hoc suppression method, requires zero training, and can be attached to any model as a single linear head.

Masked image modeling (MIM) methods typically operate in either raw pixel space (reconstructing masked patches) or latent feature space (aligning with a pre-trained teacher). We present MEDiC (Multi-objective Exploration of Distillation from CLIP), a framework that combines both spaces in a single pipeline through three complementary objectives: patch-level token distillation from a frozen CLIP encoder, global CLS alignment, and pixel reconstruction via a lightweight decoder. We conduct a systematic investigation of the design space surrounding this multi-objective framework. First, we show that all three objectives provide complementary information, with the full combination reaching 73.9% kNN accuracy on ImageNet-1K. Second, we introduce hierarchical clustering with relative position bias for evolved masking and find that, despite producing more semantically coherent masks than prior methods, evolved masking does not outperform simple block masking in the teacher-guided distillation setting, a finding we attribute to the teacher's inherent semantic awareness. Third, we reveal that optimal scalar loss weights are extremely fragile, with small perturbations causing drops of up to 17 percentage points in kNN accuracy. Our framework achieves 73.9% kNN and 85.1% fine-tuning accuracy with ViT-Base at 300 epochs.

Foundation models are now increasingly being developed for Earth observation (EO), yet they often rely on stochastic masking that do not explicitly enforce physics constraints; a critical trustworthiness limitation, in particular for predictive models that guide public health decisions. In this work, we propose SpecTM (Spectral Targeted Masking), a physics-informed masking design that encourages the reconstruction of targeted bands from cross-spectral context during pretraining. To achieve this, we developed an adaptable multi-task (band reconstruction, bio-optical index inference, and 8-day-ahead temporal prediction) self-supervised learning (SSL) framework that encodes spectrally intrinsic representations via joint optimization, and evaluated it on a downstream microcystin concentration regression model using NASA PACE hyperspectral imagery over Lake Erie. SpecTM achieves R^2 = 0.695 (current week) and R^2 = 0.620 (8-day-ahead) predictions surpassing all baseline models by (+34% (0.51 Ridge) and +99% (SVR 0.31)) respectively. Our ablation experiments show targeted masking improves predictions by +0.037 R^2 over random masking. Furthermore, it outperforms strong baselines with 2.2x superior label efficiency under extreme scarcity. SpecTM enables physics-informed representation learning across EO domains and improves the interpretability of foundation models.

Self-supervised visual pre-training methods face an inherent tension: contrastive learning (CL) captures global semantics but loses fine-grained detail, while masked image modeling (MIM) preserves local textures but suffers from "attention drift" due to semantically-agnostic random masking. We propose C2FMAE, a coarse-to-fine masked autoencoder that resolves this tension by explicitly learning hierarchical visual representations across three data granularities: semantic masks (scene-level), instance masks (object-level), and RGB images (pixel-level). Two synergistic innovations enforce a strict top-down learning principle. First, a cascaded decoder sequentially reconstructs from scene semantics to object instances to pixel details, establishing explicit cross-granularity dependencies that parallel decoders cannot capture. Second, a progressive masking curriculum dynamically shifts the training focus from semantic-guided to instance-guided and finally to random masking, creating a structured learning path from global context to local features. To support this framework, we construct a large-scale multi-granular dataset with high-quality pseudo-labels for all 1.28M ImageNet-1K images. Extensive experiments show that C2FMAE achieves significant performance gains on image classification, object detection, and semantic segmentation, validating the effectiveness of our hierarchical design in learning more robust and generalizable representations.

Pretraining and fine-tuning have emerged as a new paradigm in remote sensing image interpretation. Among them, Masked Autoencoder (MAE)-based pretraining stands out for its strong capability to learn general feature representations via reconstructing masked image regions. However, applying MAE to multispectral remote sensing images remains challenging due to complex backgrounds, indistinct targets, and the lack of semantic guidance during masking, which hinders the learning of underlying structures and meaningful spatial-spectral features. To address this, we propose a simple yet effective approach, Spectral Index-Guided MAE (SIGMAE), for multispectral image pretraining. The core idea is to incorporate domain-specific spectral indices as prior knowledge to guide dynamic token masking toward informative regions. SIGMAE introduces Semantic Saliency-Guided Dynamic Token Masking (SSDTM), a curriculum-style strategy that quantifies each patch's semantic richness and internal heterogeneity to adaptively select the most informative tokens during training. By prioritizing semantically salient regions and progressively increasing sample difficulty, SSDTM enhances spectrally rich and structurally aware representation learning, mitigates overfitting, and reduces redundant computation compared with random masking. Extensive experiments on five widely used datasets covering various downstream tasks, including scene classification, semantic segmentation, object extraction and change detection, demonstrate that SIGMAE outperforms other pretrained geospatial foundation models. Moreover, it exhibits strong spatial-spectral reconstruction capability, even with a 90% mask ratio, and improves complex target recognition under limited labeled data. The source codes and model weights will be released at https://github.com/zxk688/SIGMAE.

Masked Image Modeling has been one of the most popular self-supervised learning paradigms to learn representations from large-scale, unlabeled Earth Observation images. While incorporating multi-modal and multi-temporal Earth Observation data into Masked Image Modeling has been widely explored, the spatial dependencies between images captured from neighboring areas remains largely overlooked. Since the Earth's surface is continuous, neighboring images are highly related and offer rich contextual information for self-supervised learning. To close this gap, we propose NeighborMAE, which learns spatial dependencies by joint reconstruction of neighboring Earth Observation images. To ensure that the reconstruction remains challenging, we leverage a heuristic strategy to dynamically adjust the mask ratio and the pixel-level loss weight. Experimental results across various pretraining datasets and downstream tasks show that NeighborMAE significantly outperforms existing baselines, underscoring the value of neighboring images in Masked Image Modeling for Earth Observation and the efficacy of our designs.

Masked Image Generation Models (MIGMs) have achieved great success, yet their efficiency is hampered by the multiple steps of bi-directional attention. In fact, there exists notable redundancy in their computation: when sampling discrete tokens, the rich semantics contained in the continuous features are lost. Some existing works attempt to cache the features to approximate future features. However, they exhibit considerable approximation error under aggressive acceleration settings. We attribute this to their limited expressivity and the failure to account for sampling information. To fill this gap, we propose learning a lightweight model that incorporates both previous features and sampled tokens, and regresses the average velocity field of feature evolution. The model has moderate complexity that suffices to capture the subtle dynamics while keeping lightweight compared to the original base model. We apply our method to two representative MIGMs and tasks. In particular, on the state-of-the-art Lumina-DiMOO, it achieves over 4x acceleration of text-to-image generation while maintaining quality, significantly pushing the Pareto frontier of masked image generation. The code and model weights are available at https://github.com/Kaiwen-Zhu/MIGM-Shortcut.

Continuous monitoring of vital signs in Pediatric Intensive Care Units (PICUs) is essential for early detection of clinical deterioration and effective clinical decision-making. However, contact-based sensors such as pulse oximeters may cause skin irritation, increase infection risk, and lead to patient discomfort. Remote photoplethysmography (rPPG) offers a contactless alternative to monitor heart rate using facial video, but remains underutilized in PICUs due to motion artifacts, occlusions, variable lighting, and domain shifts between laboratory and clinical data. We introduce a self-supervised pretraining framework for rPPG estimation in the PICU setting, based on a progressive curriculum strategy. The approach leverages the VisionMamba architecture and integrates an adaptive masking mechanism, where a lightweight Mamba-based controller assigns spatiotemporal importance scores to guide probabilistic patch sampling. This strategy dynamically increases reconstruction difficulty while preserving physiological relevance. To address the lack of labeled clinical data, we adopt a teacher-student distillation setup. A supervised expert model, trained on public datasets, provides latent physiological guidance to the student. The curriculum progresses through three stages: clean public videos, synthetic occlusion scenarios, and unlabeled videos from 500 pediatric patients. Our framework achieves a 42% reduction in mean absolute error relative to standard masked autoencoders and outperforms PhysFormer by 31%, reaching a final MAE of 3.2 bpm. Without explicit region-of-interest extraction, the model consistently attends to pulse-rich areas and demonstrates robustness under clinical occlusions and noise.

Objective: X-ray angiography is the gold standard imaging modality for cardiovascular diseases. However, current deep learning approaches for X-ray angiogram analysis are severely constrained by the scarcity of annotated data. While large-scale self-supervised learning (SSL) has emerged as a promising solution, its potential in this domain remains largely unexplored, primarily due to the lack of effective SSL frameworks and large-scale datasets. Methods: To bridge this gap, we introduce a vascular anatomy-aware masked image modeling (VasoMIM) framework that explicitly integrates domain-specific anatomical knowledge. Specifically, VasoMIM comprises two key designs: an anatomy-guided masking strategy and an anatomical consistency loss. The former strategically masks vessel-containing patches to compel the model to learn robust vascular semantics, while the latter preserves structural consistency of vessels between the original and reconstructed images, enhancing the discriminability of the learned representations. In conjunction with VasoMIM, we curate XA-170K, the largest X-ray angiogram pre-training dataset to date. Results: We validate VasoMIM on four downstream tasks across six datasets, where it demonstrates superior transferability and achieves state-of-the-art performance compared to existing methods. Conclusion: Incorporating vascular anatomical knowledge into self-supervised pre-training enables more discriminative and transferable representations for X-ray angiogram analysis. Significance: These findings highlight the significant potential of VasoMIM as a foundation model for advancing a wide range of X-ray angiogram analysis tasks. VasoMIM and XA-170K are available on GitHub and Hugging Face, respectively.

Semantic map completion, which predicts the layout of unobserved regions from partial observations, is a critical capability for indoor robot navigation. Existing approaches either rely on high-dimensional discrete codebooks that inflate memory, or on iterative diffusion sampling that is too slow for real-time use. We present FastMap, a lightweight two-stage framework for completing top-down categorical semantic maps. First, a lookup-free BitVAE exploits the inherently binary (one-hot) structure of semantic maps to compress each map patch into compact bitwise tokens, yielding a 0.41GB model that is 3.7 times smaller than the prior masked-modeling baseline. Second, a Masked AutoEncoder (MAE)-style transformer reconstructs missing tokens in a single forward pass at 0.011s/map. To support object goal navigation, we additionally introduce an object-aware masking strategy that masks the target category during training and conditions generation on a learnable category embedding, without adding inference cost. On the Gibson benchmark, FastMap achieves 34.10% mIoU and 45.84% semantic Success Rate (sSR), more than doubling the previous best (21.88%), and reaches 83.8% Success Rate on downstream ObjectNav, the highest among the compared navigation methods.